KEGG   Rana temporaria (common frog): 120940380
Entry
120940380         CDS       T07929                                 
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
rtem  Rana temporaria (common frog)
Pathway
rtem04140  Autophagy - animal
rtem04148  Efferocytosis
rtem05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:rtem00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    120940380 (VPS41)
   04148 Efferocytosis
    120940380 (VPS41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    120940380 (VPS41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rtem04131]
    120940380 (VPS41)
Membrane trafficking [BR:rtem04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    120940380 (VPS41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin WD40_Prp19 WD40_CDC20-Fz zf_RING_Vps8_fungal Beta-prop_HPS5 ANAPC4_WD40 Beta-prop_EML_2 Beta-prop_RIG_2nd WD40_WDHD1_1st zf_RING_Vps8 Vps39_1 zf-RING_2 zf-RING_11 zf-RING_5 Pep3_Vps18 TPR_PEP5_VPS11 Beta-prop_WDR19_1st zf-rbx1 zf-RING_UBOX zf-C3H2C3
Other DBs
NCBI-GeneID: 120940380
NCBI-ProteinID: XP_040209124
LinkDB
Position
5:143610199..143987796
AA seq 860 aa
MAETQGFLGSAEQELMTPEESTEESEEDDSEEEPKLKYERLSNGVSDILQEDAASCMTVH
EKFLALGTHNGKVYLLDIQGNMTQKFDISTVKINQISLDESGEHVGICAEDGKVQVFGLY
SREGLHEIFDCPIKIVAVHPQFGKSNCKQFVTGGNKLLLYERTWLNRWKTTVLHEGEGNI
TNIKWRGNFIAWVNNMGVKILDIITRQRITNVPRDDTSLRPDMYPCSLFWKNNLTLIIGW
GKSVKICTVKERHPSEIRDLPNRYVEIVSQFDTEFFISGIAPLCDQFVMLFFVKETSDRG
NKEFCARPRLDIIQPNPDCCEEVSSDAITVRGFQENECRDYRLEYAEGESLFYIISPRDV
VVAKERDQDDHIDWLLGRKKYEEALMAAEISQKNIKRHEVLDIGLAYITHLVEKEDYDNA
ARKCQKILGKNMKLWEDEVYRFKSIGQLKAISKYLPRGDLRLRPAIYEMILDEFLITDYE
GFATLIREWPGDLYNNKTIVKALKGHLNKDPNNRILLEALAELHVYDQCYSKALEIYLTL
RHKEVFELINKHNLFDCIKDKIVLLMDFDTEKAVDMLLDNEDKISIDKVVVELKERPELQ
HVYLHRLFKRDHHKGQKYHEKQISLYAEFDRPNLLPFLRDSTHCPLEKALEICLQRNFVE
ETVFLLSRMGNSRRALQMIMEELRDVDKAIEFAKEQDDAELWEDLILYSIDKPPFITGLL
NNIGTHVDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVSDSLSLLNK
MHRTQSRSMLVDEDNICEVCLSPILPTDTSKPLGVVVFHCRHMFHRECLPVGNTMSPVYF
CNICSAKHRGPGSAILDIKK
NT seq 2583 nt   +upstreamnt  +downstreamnt
atggctgaaacgcagggattccttggatctgcagagcaggaattgatgactcctgaagag
tctactgaagaatcagaggaggatgacagtgaagaggaacccaagttgaagtatgaaaga
ctgtcgaatggtgtgagtgacatcttacaggaggatgcagcaagctgcatgacagtccac
gagaagttcctggccttggggactcacaatgggaaggtttatttgctggatatccaagga
aacatgactcagaagtttgatattagcactgtgaaaatcaatcagattagcctggatgaa
agcggggaacatgtaggcatctgtgcagaggatggcaaggtgcaagtgtttggactgtat
tcaagagaaggattgcatgaaatttttgactgtccaataaagattgttgctgttcatcct
caatttggaaaatctaactgtaagcagtttgtcactggaggaaacaagttgctcttatat
gaaagaacttggctgaatcgatggaaaacaaccgtcctacatgaaggagaagggaatata
acaaacatcaagtggagagggaatttcattgcttgggtcaataatatgggagtaaagata
cttgacataatcacaaggcaaaggataacaaatgtgcccagagatgatacgagtctacgc
ccagacatgtacccgtgcagtctcttttggaaaaacaatctgactctcatcattggatgg
ggcaaatctgttaagatttgtactgtgaaagagcgacatcccagtgaaataagagaccta
ccaaatcgttatgttgagattgtttcacagttcgatacagaattcttcatcagtggaatt
gcgcctctctgtgatcagtttgtgatgctcttctttgtaaaggagacttccgatagaggg
aataaggagttttgtgccagaccacgtcttgatataattcagccaaatccagattgttgt
gaagaagtgtcctcagatgccataacggtcaggggatttcaagaaaatgagtgcagagac
tatcgcttagaatatgctgaaggcgaatccctgttttatataatcagcccaagagacgtt
gttgtcgcaaaagaaagagatcaagatgaccatattgactggttgcttgggaggaagaaa
tatgaggaagctcttatggctgcagaaatcagtcagaaaaatattaagcgacatgaagtt
ttggatattggtttagcctatataacacatctggtagaaaaagaagattatgataatgct
gccaggaaatgtcagaaaatactcggcaaaaatatgaaactttgggaagatgaggtgtac
cgctttaagagtattggacagttgaaggcaatcagcaagtatttgccaagaggtgattta
cggctaagacctgcgatttatgaaatgatcctggatgaatttttgataactgattatgag
ggattcgcaacactaataagagaatggcctggagacctgtacaataacaaaaccatagta
aaagctttaaaggggcatttgaacaaagacccaaacaaccgaatacttctggaggctctg
gcagaattacatgtatatgatcagtgttacagtaaagctcttgaaatttatttaacactt
cggcacaaagaggtctttgaacttataaacaaacataacctcttcgactgtatcaaggac
aaaattgtcttactcatggattttgatactgagaaagctgttgatatgcttttggacaat
gaagacaagatttctattgataaagttgtggtggaattaaaagaaagaccagaactgcaa
catgtgtacttgcacaggcttttcaagagggaccatcacaaaggacagaagtaccatgag
aaacaaatcagcttgtatgcagaatttgacagaccaaatcttttgcctttccttcgagac
agcactcactgcccactagaaaaggctcttgagatctgtcttcagagaaattttgttgaa
gagacagtttttttgttaagcagaatggggaacagtcgcagggccttgcagatgattatg
gaggaactacgtgatgtggataaagctattgagtttgccaaagaacaggatgacgctgag
ctgtgggaggaccttattctgtactctattgataaaccaccattcataactggattactt
aacaacattgggacccatgttgatccaatcttactgattcaccgcatcaaagaaggaatg
gagattcctaatctgagggactcacttgtaaaaattctgcaagactacaacctccagata
cttctaagggaagggtgcaaaaaaatattagtatcggactccctatcactgctaaataaa
atgcacagaacacagtcaagatctatgctggttgatgaggacaatatttgtgaagtgtgt
ttgtcacccattctgccaacagatacttctaaaccgcttggtgtggtggtatttcactgc
agacacatgttccatagagagtgtctgcctgttgggaacacaatgtctcctgtttacttc
tgcaatatctgtagtgcaaaacatcgtggtcctgggagtgcaatcctagacattaagaag
tag

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