Rana temporaria (common frog): 120940618
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Entry
120940618 CDS
T07929
Symbol
DROSHA
Name
(RefSeq) ribonuclease 3 isoform X1
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120940618 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120940618 (DROSHA)
03009 Ribosome biogenesis [BR:
rtem03009
]
120940618 (DROSHA)
03036 Chromosome and associated proteins [BR:
rtem03036
]
120940618 (DROSHA)
Enzymes [BR:
rtem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
120940618 (DROSHA)
Messenger RNA biogenesis [BR:
rtem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
120940618 (DROSHA)
Ribosome biogenesis [BR:
rtem03009
]
Eukaryotic type
90S particles
RNase
120940618 (DROSHA)
Prokaryotic type
rRNA processing factors
120940618 (DROSHA)
Chromosome and associated proteins [BR:
rtem03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
120940618 (DROSHA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
Motif
Other DBs
NCBI-GeneID:
120940618
NCBI-ProteinID:
XP_040209507
LinkDB
All DBs
Position
5:complement(231773443..232251730)
Genome browser
AA seq
1348 aa
AA seq
DB search
MSLHAGRGGQQARAGPGAPVQTYRPQNVRPAQMQQSSGQYCYNPQSTPPPTFSSLPNTSY
IPPRPDYMCYPPPVAPPTQNAVNQCLPRPTYPIRQSYPMPPGFPPAPPSTLGPGNPPPAG
PPTAQGTYPYIAPPLMPPPPIMPPPLPHVGYQPVYPSGYPLHAFPPPPPPPQPVPSFNSY
QQNSASFQGNSHYRHSSHDPYQTDKPQSDHRTQDRSKHYDAHRHREYSHSDRHRSEKHSD
RRDRGRSPDRARRIDSSRRRSEYEHSRTPFHGRTPPRHGSYERSRERHRHRDSRRSPTPE
RSYRKRQKSISPSRERKRPRWDDELKDSTSESPSSGKEKSYFSIKDKDFLDEGMLERTEE
DDEDLLKPVWVRCTHSESYYSSDPMDQVGDSTVVGTSRLRDLYDKFEEELGKRQTKARAA
RPAWEPPKTKLDEDFESSSDSDCDTDDDDDSCSSSSDSEVFDVIGEIKRKKAHPDRLHDE
LWYNDPGQMNDGPLCKCSIKARNTGIRHSFYPGEESIKSCRPMTNNAGRLFHYRITVSPP
TNFLTDRPTVIEYDDHEYIFEGFSMFSHLPLTSIPLCKVIRFNIDYTIHFIEEMMPEHFC
VKGLELFSSYLFRDILELHDWNLIGPTVEDNRAVCPQFHFMPRFVRFLPDGGKEVLSMHQ
VLLNLIRSNKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPVMKPSSVRIDQLDREQ
FNPEVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQADKQKLVQR
EEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHKCLMHLDK
LTGYIFKDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHYMHMRKKG
INTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRT
AIVQNQHLAMLAEKLELDRFMLYAHGPDLCRESDLRHAMANCFEALMGAVYYEGGLEESK
ELFGRLLFGTQDLQDVWLNYPRHPLQLQESNTDRQLIETSPVLKKLTKFEEAIGVQFTHV
RLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPGHHEGHLTLLRSSL
VNNRTQAKVAEELGMQEFAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFM
NVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVA
VYFKGERIGCGKGPSIQQAEMQAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRLEKEQ
QENAEDALLDPICGKTPQRPSPRPSLQH
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgcatgcagggagaggaggacaacaggctcgagcaggccctggagcaccggtg
cagacatatcgcccacaaaatgtaaggcctgcccagatgcagcagtcttctgggcagtat
tgctataacccacaaagtaccccacctcccacgttttctagccttcctaacacaagttac
atacctccgaggccagattacatgtgctatcctccaccggttgccccgcctacccaaaat
gcagtaaatcaatgtcttccaaggccaacgtatcctatcagacagagttacccaatgcca
ccaggttttcctcctgctccaccatctacacttggcccaggaaatcctccaccggccgga
ccacctactgcacaaggcacctatccttatattgcccctcctcttatgccaccaccacct
attatgcctcctcctttgccacatgtgggttatcagccagtatacccctctggctatcca
cttcatgcttttcccccaccgccacctcctcctcaacctgtgcctagctttaatagctat
caacagaattcagcctcttttcaaggcaatagccactacaggcactcaagtcatgatcca
tatcagacagataaaccacagagtgatcaccgaacacaggacagaagcaaacattacgat
gctcaccgacatagggaatacagtcacagtgatagacaccgctctgagaaacacagtgat
cgaagagatcgaggaaggagccctgaccgtgcaagacgaatagatagtagtcggcgtaga
tcggagtatgagcacagtaggacaccttttcatggcagaaccccaccacgtcatggaagt
tatgagcgcagcagggagcggcacagacatcgggatagccgaagatcaccaactcctgaa
agaagctataggaaaagacaaaaaagcatatctcctagtagagagcgcaagagaccaaga
tgggatgatgaactcaaggacagcacttctgaaagcccctcctctgggaaggaaaaaagt
tatttctctataaaagataaagattttctggatgaaggcatgttggaaagaactgaggag
gatgatgaagatctgttgaagcctgtatgggttcgctgcactcattcggaaagttactat
tccagtgacccaatggatcaagtaggtgactccactgtggttggaacaagcaggttgcgg
gatttgtatgacaagtttgaagaggaacttggcaagcgtcagacaaaagcaagagctgcc
aggccggcgtgggagccaccaaagaccaaattagatgaagattttgaaagctccagtgat
tctgactgtgatacagatgatgatgatgatagctgttccagcagctcggactctgaagtg
tttgacgtgattggagaaataaagaggaagaaagctcatcccgaccgcctccatgacgag
ctgtggtataatgaccctggtcagatgaatgatggccccctgtgtaagtgcagcattaaa
gccagaaatacaggaatccgtcacagcttttatcctggagaagagtcaatcaagtcatgc
cgtcccatgacaaacaatgcaggacgtctctttcactacaggattaccgtatccccgcca
accaatttcttaactgatcgacctactgttatagagtacgatgatcatgaatacatcttt
gagggattttctatgttctcccatttacccctcacaagtattcccttgtgcaaagtaatc
cggtttaacattgactacacaattcatttcattgaggaaatgatgcccgagcatttctgt
gtgaagggacttgaactgttttcctcttacctgttcagggacatattagagcttcatgac
tggaatcttattggtccaactgttgaagataatcgtgctgtgtgtccacaatttcatttc
atgcctcgttttgtacgatttttgccagatgggggtaaagaagttctatctatgcaccaa
gtgttgttgaatttgattcgaagtaacaaagcattggttccagaagaagaaattgcaaac
atgctccagtgggaggagctagagtggcaaaaatatgcagaagaatgcaaaggaatgatt
gtcactaaccctgtaatgaaacccagctcagttcgaattgatcagcttgaccgtgagcag
tttaacccagaagtgattactttccctattattgtgcattttggtataagacctgcccag
ctgagttatgctggagatccacaatatcagaaactatggaaaagttatgtgaagttgcgc
catctactggccaacagtccaaaagtcaaacaagcggataagcagaaattggtccagagg
gaggaagctcttcagaagatcagacagaagaacacaatgaggcgtgaagtaacagtagaa
ctcagtagccagggtttttggaaaactggcattcgctcggatgtctgccagcatgcaatg
atgctgccagtgctgacccatcacatccgctatcacaagtgtctgatgcatttggataaa
cttactggatatatttttaaggatcgctgcttgctgcagcttgctatgactcacccaagc
caccatttaaactttgggatgaaccctgaccatgctcgcaactctctttccaactgtgga
attaggcagccaaaatacggggatagaaaagttcattacatgcacatgcgtaaaaaagga
ataaatacgctgataaacattatgtctcgtctggggcaagatgatccagccccttcacga
ataaaccacaatgagcgcttggaattcttaggagatgctgtggttgaatttttaacaagc
gtccacctgtactacctatttcccagtctagaagaaggaggattggctacgtatcggacg
gctattgttcaaaatcagcatcttgcaatgctggcagagaaactggaactggatcgtttt
atgctgtatgctcatggaccagacttgtgtagagaatcagatttgcggcatgccatggca
aactgctttgaagctctgatgggtgctgtttactatgaaggtggacttgaagagtcaaag
gagttatttggaaggttgttgtttggcactcaggacctgcaggacgtgtggcttaattat
ccccgacacccacttcaacttcaggagtctaacactgatcgacagctgattgagacatca
ccggtccttaagaaactgacaaaatttgaagaagcaattggagttcagtttactcatgta
cgacttctagctcgagctttcaccttgagaacagtgggatttaaccatctgaccttaggc
cacaaccaaaggatggaattcctgggtgactctataatgcagctggtagccacggaatat
ttattcatacatttccctggtcatcacgagggccacttaacgctgcttcgtagctcactg
gtgaacaacaggacacaagctaaagtagcggaagagctaggtatgcaagagtttgccatc
acaaacgataaaacaaagagacccgtggctctccgtaccaagaccttggctgatttgttg
gaatcatttattgcggcactttatatcgataaggacttggaatacgttcacacttttatg
aatgtgtgcttcttcccacgactaaaggagtttattctaaatcaagactggaatgatcct
aaatctcaacttcagcaatgctgtttgactctgagaacagaaggaaaggagccagatatt
ccactgtacaagactctacagactgtaggcccttcccatgcaagaacctatactgttgct
gtgtacttcaaaggagagcgaattggttgtggtaaaggaccaagcattcagcaggctgag
atgcaagctgctatggacgccttggagaaatataacttcccccagatggctcatcagaaa
cgttttatcgaacggaagtacaggcaggaattgaaagaaatgaggttggagaaggagcaa
caagagaacgcggaagacgctttgctggatccaatatgcgggaagacgccccagagacca
tctccacgaccatctttacaacactga
DBGET
integrated database retrieval system
