Rana temporaria (common frog): 120940908
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Entry
120940908 CDS
T07929
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03013
Nucleocytoplasmic transport
rtem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120940908 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
120940908 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120940908 (THOC1)
03041 Spliceosome [BR:
rtem03041
]
120940908 (THOC1)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
120940908 (THOC1)
Spliceosome [BR:
rtem03041
]
Complex C
Other components
EJC/TREX
120940908 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120940908 (THOC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
Motif
Other DBs
NCBI-GeneID:
120940908
NCBI-ProteinID:
XP_040209976
LinkDB
All DBs
Position
5:300426599..300460314
Genome browser
AA seq
671 aa
AA seq
DB search
MSPLLFSLQEARSKFMNATREAVTSKNTKQLLTAFSQVAGSENEKKLTLDQVFRGVLEEE
IINQASCENCLAIISLAINGVTEGICTATTPFVLLGDVLDCLPLDHCDRIFTFVEKNVGT
WKANTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENVTVFNVNESESTLGQKQVEDRDDGMEIEEGEMGDDEAPNNSSSIPIDYNLYRKFWSL
QDFFRNPVQCYDKSSWKIFLKFSEEVLAVFKSYKLDDTQASRKKIDELKSGGEHVYFAKF
LTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLLDEQSLWIEDTTKNVH
QLLRETPPDGEKFSKMVEHILSTEENWNSWKNEGCPSFVKERPQDGKPQKVARKRPAPED
FLGKGSNKKLLMGNDELTRLWNLCPDNIEACKLESREFMPTLEQFFEEAIEQADPDNMVE
NEYKVVNNSNYGWRALRLLARRSPHFFQPTNQQFRSLPEYLENMVIKLAKELPTPKLHKL
KIRPPSEEIKTGEDEDEDDEDNESLLKENNESPEVQQQNLVSGELMEALATKLGEHWKTL
APYLEIKASDMKVIESDSEDVKMRAKLLLIAWQDQEGARATTENLISALNLAHLNELAET
LASDAESCTQI
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgctgttgttcagcttgcaggaggcgaggagtaaatttatgaatgctaccaga
gaagctgtgactagcaagaacaccaagcaattgttgactgcgtttagccaggtggctgga
agtgaaaatgagaaaaagctgacacttgaccaagttttcagaggtgttttggaggaggaa
attattaaccaagcatcttgtgagaactgtcttgcgattatttctcttgccatcaatggc
gttacagaaggtatttgtacagctaccacaccttttgtgctcttgggagatgtcctcgac
tgtcttcctctggaccactgcgatagaatctttacatttgttgaaaaaaatgttggaaca
tggaaagccaatacattttattcagctggcaaaaattacttgctaaggatgtgtaatgac
cttttgaggagactctccaagtcacagaacactgtgttttgcgggaggattcagctgttt
cttgcccgcttatttccactttcagaaaaatcaggtttgaatttgcagagtcagtttaac
ctggagaatgtcactgtgttcaatgtcaatgagagtgagagcactctgggacagaaacaa
gtggaggatagggatgatggaatggagattgaggaaggtgaaatgggagatgacgaagcc
cccaacaacagttcgtcaattcccatagattacaacctatatagaaagttttggtcgctg
caggactttttcaggaatccagtacagtgctatgacaagagttcctggaagatatttctt
aagttctcggaggaggttcttgcagtgtttaagagttacaagctggacgatactcaggca
tcacgaaaaaaaatcgacgagctgaaatcgggaggtgaacatgtgtactttgctaagttc
ctgacaagtgaaaagttgatggatttacagttgagtgacagcaacttccgccgacatatc
ttgttgcagtaccttatattgttccagtacttaaaaggccaagtaaagtttaagagctct
aattatgtgttgctagatgagcagtctctttggattgaagataccaccaagaacgttcat
cagttgctgcgtgagactccccctgatggagagaagttttcaaaaatggtggagcacata
ctaagcacagaagaaaactggaattcttggaaaaatgaaggctgtccaagtttcgtgaaa
gagagaccgcaagacggcaaaccacagaaagtagcaagaaaacgtccggcccctgaggac
tttctgggcaaaggttcaaataaaaagctcctaatgggaaatgatgaattaacccggctg
tggaatctttgtccagacaacatagaggcatgcaaattagaaagcagagagtttatgcca
acgctggaacagttttttgaagaggccattgaacaagcagatcctgacaacatggtggaa
aacgaatacaaggtagtgaacaactcaaattatggctggcgggcgttgaggctgttggct
cgtagaagtcctcactttttccaacctaccaaccagcagtttaggagtttaccagaatat
ctggagaatatggtgatcaagttggccaaggaattgccaactcctaaactacacaaattg
aagatcaggcccccatcagaggaaataaaaacgggagaggacgaagatgaggatgatgaa
gacaacgaatctttattaaaggaaaacaatgaaagtccagaagtccagcaacagaatcta
gtctctggtgagctgatggaagcacttgccaccaagcttggagagcactggaaaacactg
gctccttacttagaaatcaaagcatcggacatgaaggttattgaatcggacagtgaagac
gtgaaaatgagggcaaaattgttacttatcgcttggcaagatcaagaaggggctcgtgcc
accactgagaatcttatttcagctttaaatctggctcatttaaatgaactggcagaaacc
ttagccagtgatgcagaaagttgcacacaaatctag
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integrated database retrieval system
