Rana temporaria (common frog): 120940937
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Entry
120940937 CDS
T07929
Symbol
TAF4B
Name
(RefSeq) transcription initiation factor TFIID subunit 4B isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120940937 (TAF4B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtem03021
]
120940937 (TAF4B)
03036 Chromosome and associated proteins [BR:
rtem03036
]
120940937 (TAF4B)
Transcription machinery [BR:
rtem03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120940937 (TAF4B)
Coactivators
SAGA/TFTC/STAGA complex
120940937 (TAF4B)
Chromosome and associated proteins [BR:
rtem03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
120940937 (TAF4B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
120940937
NCBI-ProteinID:
XP_040210029
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All DBs
Position
5:305150190..305328171
Genome browser
AA seq
885 aa
AA seq
DB search
MHAVQATSAAVVSQAMTLNHGVLVKSQPAMSSSDLAIKTSQMVSGPTASLSQVPASQASV
LSAPMCTLVTKVSPVVGQASKMTIGPKVTTQQAVPPKASQTTIQLPANFQIPPGTVLVRS
SNGQLMLVSQQALARAQAQVQSTKPSAPSNTQTVHVSNVQTAGTTCNVSKAGPPVPVPTV
VRICATPGTIANSQGTSTVIIRASAPSATPINTLSRSLPSTVVTVPASTGVLSASVAGLN
ATTAAGLNATTAAVVPVRTSSPPVTTNGASNVVSARTVSSTATAPTASPALHNTVNLNIG
QTAVPTNNQQVATSSSAIKLASTNICMTPLLSAGATTTVAPASIIVSRIAPASTAVTTVV
SENNRIQQMQTNTPAMTSGVVPKKAEPSTKLQSTQRPNASEAMDNVKKCKNFLATLIKLA
SSGPQSPTMGQNVKNLVKNLLDSKLEPEEFTTKLYKELKSSPQPYLVPFLKKSLPSLRRM
MPNSQEFILQCGPQNPTPPVAATNSLSFVKITPTTSIQTVKPACTTIFSNAKVPQAAVAV
PQPLNSLKAVNFKPLVVQQPAVGIVKHATTLSPGAAMTHNKPGEKQISLNTLIQSGHMTP
ASVLKQITLPGNKVISLQASRLPIKENGTACFREEDDINDVTSMAGVNLNEENACILATN
SELVGAVIRSCKDEPFLFTSALQIRILDMGKRHDIKELNSDVLNLVSHATQERLRGLIEK
LTVVAHHRSTSYKQNDRYVQSSEVRAQLKFLEQLEHLEKQRKCEEEREMLLRAAKSRSNK
EDPEQMRLKQKAKELQQLELEQLQYREANLTALAAIGPRRKRPLESSHLHSVLEEDQRSG
SSAFRIPKVISVPRVTRVNLRDLIFCMEQERTSRHSLTLYRALQK
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgcatgcggtacaagctacctctgcagctgtggtgagccaggccatgactttaaaccat
ggggtccttgtcaagagtcagcctgcaatgtcctcctctgatcttgccatcaaaacttcc
cagatggtgtctggacccactgccagcctgagccaggtaccggcttcccaggcctccgtg
ctttctgcgcctatgtgcacactagtaacaaaagtttcacctgtagtaggtcaagcatca
aaaatgacaattggccccaaagtgacaacacagcaagcagttcctcccaaagcatctcag
acaaccattcagttaccagcgaacttccagattccccctggcactgttcttgtcaggagt
agcaatggccagctcatgttggtctcgcaacaggctctggcccgagcgcaggcacaagtt
caaagtaccaaaccctctgcaccttcaaatactcaaactgttcatgtctccaatgtacag
actgcaggtacaacatgcaatgtttccaaagcaggtcctccagtcccagtacctactgta
gttagaatctgcgctactcctggaacaatagctaacagccaaggaacctcaacggtcatt
attagagcctctgctccctcggccactcccataaatactctctcacgttctttaccttcc
actgtagtaacagtccctgcctctactggagttctatctgcatctgtagctggtctgaat
gcaactaccgccgctggtctgaatgcaactactgccgctgtggttcctgttagaacttcc
tcaccaccagtgacaaccaatggagcttctaatgtggtgtcagctaggactgtttcttct
actgctacagcaccaacagctagccctgctttacacaataccgttaatttgaatattggg
cagactgctgtgccaactaacaatcagcaagttgctacaagtagttctgctatcaagttg
gcatctacaaatatctgcatgactccactactatctgcaggtgctaccactactgtagca
cctgcttcaattattgtatcccgtatagccccagcttctactgcagttaccactgtggtg
tctgaaaataacaggatacagcagatgcaaaccaacacaccagcaatgacctccggtgtc
gtccccaaaaaagcagagccttccactaaactgcaaagcacacaacgtcctaatgcctca
gaagcaatggataatgtaaagaaatgcaagaattttcttgcaacactaataaaactggca
tccagtggaccacagtcaccgaccatgggtcagaatgtgaaaaatctggtgaagaattta
cttgactccaaacttgaaccagaagaatttactacaaaactctacaaagaactgaagtcc
tcgccacaaccatatctggttccatttctgaagaaaagtttaccctccttgcggcggatg
atgccgaactcccaggagtttatcctacaatgtggtccacagaacccaacgccacctgtc
gctgctaccaactcgctctcttttgttaaaattacaccaacaacctctatacagactgta
aaacctgcatgcactactatatttagcaatgctaaagttccccaggctgccgtagctgtg
ccccagccacttaacagcttgaaagctgtgaacttcaagccgttggtagttcagcagcca
gccgttggaatagtgaagcatgcaaccacgctgtcccccggtgcagcaatgacccataac
aaacctggagagaagcaaatctctctgaatacacttatccaatcagggcacatgacacca
gcatccgttttgaaacaaatcaccctgccaggaaataaagttatttccctgcaagcatct
cgtcttcccataaaagagaatggcacagcatgcttcagagaagaagatgacattaacgat
gtcacatctatggctggtgttaacctaaatgaagagaatgcatgtattttggcaaccaat
tctgaacttgttggggctgtgatccggtcttgtaaggatgagccttttctctttacatct
gccctgcaaatccggattctagacatgggtaagaggcatgatattaaggaacttaactct
gatgttctgaacctggtctctcatgccacacaagagcggttacgagggcttattgaaaag
ctgaccgtggtggcacatcacaggtccacaagctacaagcaaaatgaccgctatgtacag
tccagcgaggtacgggcacagcttaagtttcttgagcaacttgagcacttggagaaacag
cgcaaatgtgaagaagaaagggagatgcttctccgagcagcaaagagtcgctcaaataaa
gaggatccagagcaaatgagattaaagcaaaaagccaaagagcttcagcagctggaacta
gaacaactgcaataccgagaagcgaatctcacagcactggctgcaattggaccaagaagg
aaaagacctttggaatcgtcgcaccttcacagtgtgcttgaggaggatcaacgatcggga
tcttctgctttcagaattcccaaagtgatatctgttccacgggttactcgtgtaaatctc
agggatttgattttttgcatggaacaagagcgaacaagcaggcattccttgaccctgtac
cgagccctccagaaatag
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