Rana temporaria (common frog): 120941069
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Entry
120941069 CDS
T07929
Symbol
SHH
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
120941069 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rtem01002
]
120941069 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rtem00536
]
120941069 (SHH)
Peptidases and inhibitors [BR:
rtem01002
]
Cysteine peptidases
Family C46: hedgehog family
120941069 (SHH)
Glycosaminoglycan binding proteins [BR:
rtem00536
]
Heparan sulfate / Heparin
Morphogens
120941069 (SHH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hint
DUF7764
Vint
Motif
Other DBs
NCBI-GeneID:
120941069
NCBI-ProteinID:
XP_040210252
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All DBs
Position
5:73640829..73644547
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AA seq
249 aa
AA seq
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MSLECERKVEYLEETHEENSVAAKSGGCFPANASVSLEGGGTKALKDLRPGDRVLAANEE
GKLVYSDFLTFLDKQESVKKVFYVIETPEPKQSIRLTAAHLIFVLQSSANGTRSFKSVFA
SNIKPGDQVFLADHTMMDLKVVTVDKVHLEEDIGAYAPVTAHGTVVINGFLASCYAVIEE
HSWAHMAFAPLRFAFKFFSYFSPKDYYNPPSTYLHVEGIHWYSQLLYQLGTWILDNDSLH
PLGMSTRSS
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgtccttggagtgtgagaggaaagtggagtatctggaggaaacccatgaagaaaactcg
gtggctgcaaaatccggtggttgctttcctgctaatgctagcgtctctttggaaggtggt
ggtaccaaagcattgaaggacctaaggccaggggatcgggtgctagcagcaaatgaggag
ggcaagctggtttacagtgacttcctcaccttcttggacaaacaggagagtgtgaaaaag
gtcttctatgtgattgagacccctgaacccaagcagagcatccgactgacagctgcccat
cttatcttcgtgttacagagctcagctaatggcaccaggtctttcaagtctgtttttgcc
agcaacataaaaccaggagatcaggtgtttctagctgatcatacgatgatggatctgaag
gtggtgacagtggacaaggtccacctagaggaagacattggagcttatgctcctgttact
gctcatggaacagtggtcatcaatggtttcctggcctcttgttatgcagtcattgaagaa
catagctgggcacacatggcttttgccccgctcagatttgcctttaaatttttctcctac
ttttcccccaaagactactacaacccaccttccacgtaccttcatgttgaaggcatccat
tggtactcacaactcctttaccagttaggaacttggatcttggataatgactctcttcat
ccactgggtatgtcaacgaggtccagttga
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