Rana temporaria (common frog): 120941428
Help
Entry
120941428 CDS
T07929
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03015
mRNA surveillance pathway
rtem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120941428 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
120941428 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120941428 (PABPC1)
03041 Spliceosome [BR:
rtem03041
]
120941428 (PABPC1)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120941428 (PABPC1)
mRNA cycle factors
Stress granule specific factors
120941428 (PABPC1)
Spliceosome [BR:
rtem03041
]
Complex C
Other components
Complex C specific factors
120941428 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RBD_RDR6
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
120941428
NCBI-ProteinID:
XP_040210724
LinkDB
All DBs
Position
5:367473667..367503782
Genome browser
AA seq
640 aa
AA seq
DB search
MNPGAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKDMFGKYGPALSVKVMTDDSGKSKGFGFVSFER
HEDAQKAVDDMNGKDMNGKNIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPPPSSYFMAALPPAQNRAA
YYPAGQIAQLRPNPRWTAQGARPHPFQNMPGAIRPAAPRPPTFSTMRPTSQVPRVVSAQR
VVPPANTSTQTMGPRPTNAAAAAAANSAVRTVPQYKYAAGVRNPQQHLNAQPQVAMQQPA
VHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHM
LESPESLRSKVDEAVAVLQAHQAKEAAQKSVGNATGVAAV
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaggtgctcctagctaccctatggcatccctgtatgttggggacctccaccct
gatgttacagaggccatgttgtatgaaaagttcagtcctgctggacccattttatcaatt
cgggtctgcagagacatgattacacgtcgttcccttggctatgcttacgtaaactttcaa
cagccagctgatgccgaacgtgctctggatacaatgaactttgacgtcatcaaaggcaag
ccagtacgcatcatgtggtcccagcgtgatccatctctgcgtaaaagtggagttggaaac
atctttattaagaacctcgacaaatcgattgacaataaggctctatacgacaccttttct
gcctttggaaacatcttgtcttgcaaggttgtctgtgatgagaatggatcaaagggctat
ggatttgtccactttgagacccaggaagctgctgaaagggccatcgataaaatgaatggc
atgcttttgaatgaccgaaaagtatttgttggacgttttaaatcccgcaaagaaagagaa
gctgaacttggggctagagccaaggaatttacaaacgtatacataaagaatttcggtgaa
gacatggatgatgaacggctgaaagacatgttcggcaaatatggccctgcactcagtgtc
aaagtcatgactgatgatagtggaaagtccaaaggattcggatttgtcagtttcgagcgg
catgaggatgctcagaaggctgttgatgacatgaatgggaaggacatgaacggtaaaaac
atctatgtgggtcgtgcccagaaaaaagttgagcggcagacggagcttaaacgaaaattt
gagcaaatgaagcaggaccgtatcaccagataccagggtgttaacctttatgtaaaaaat
cttgatgatgggatcgatgatgagcgacttcgcaaggagttttcaccctttggcaccatc
acaagtgcaaaggtcatgatggaaggaggacgcagcaagggctttggctttgtctgtttt
tcatcccctgaagaagcaaccaaagctgtgacggagatgaatggcagaatcgtggcaaca
aaacccctgtatgtagccctggctcagcgtaaagaggagcgccaggctcatctgactaat
cagtacatgcagagaatggcaagtgtcagggctgtgcctaatccagtcataaacccttac
cagccaccaccatccagttatttcatggctgcccttccaccggctcaaaaccgtgctgca
tattacccagctggacagattgcacagcttagaccaaaccctcgctggaccgcgcaaggt
gctagaccacacccattccaaaacatgccaggagccatccgccctgctgcacctcgtccg
cctacttttagtacgatgagaccgacttctcaggtcccacgcgttgtttcagctcagcgt
gttgttcccccagcgaacacctcaacacagacaatgggccctcgtcctacaaacgctgcc
gctgctgcagctgcaaattcggcagttcgtacagttcctcagtacaagtatgctgctggt
gtgcgcaatccacagcagcacctcaacgcccagccacaggttgctatgcaacagcctgct
gtacatgtgcagggtcaggaacccttgactgcctccatgctggctgcagccccacctcaa
gagcagaagcagatgcttggtgagcgcctcttcccactgatccaagccatgcacccaact
ctagctggaaagatcactggaatgttgctggaaattgacaattctgagttgcttcatatg
cttgagtcaccggaatcccttcgatcaaaggttgatgaagcagttgctgtccttcaagcc
catcaggccaaggaagctgcacagaagtctgttggcaatgccactggagttgcagctgtc
taa
DBGET
integrated database retrieval system
