Rana temporaria (common frog): 120942599
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Entry
120942599 CDS
T07929
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM39-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
120942599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtem04121
]
120942599
Enzymes [BR:
rtem01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120942599
Ubiquitin system [BR:
rtem04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120942599
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SPRY
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-B_box
TRIM_CC
RING_XB3-XBAT31
zf-C3HC4_3
PRY
zf-RING_2
zf-RING_5
ANCHR-like_BBOX
Med11
Knl1_RWD_C
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
120942599
NCBI-ProteinID:
XP_040211506
LinkDB
All DBs
Position
6:complement(12195911..12198160)
Genome browser
AA seq
514 aa
AA seq
DB search
MATADLKDELNCSICLQFYTEPVTLRCGHSFCQGCIRSVLDSQEGSKAYTCPECRAEYPK
RPALQRNTKLCNIVEHFQTTQPKQKKAGVYCTYCVNSSVLAVKTCLMCEASLCDVHLSVH
SKSTDHVLTEPTSSTESRKCPTHKEILKYYCCKDAKCICVSCCVFGDHRAHHVELLKEAS
EKKKDRLRKVLEKLTSKKDETEKSVQNLQEHRTEVQERAATVTAQVTALFIDLREQLKTL
EERTLTDISRQKDKVSLSVSDLIQQLEIKKDDLLRKMSNIEELCKMADPLTVLQGREFGR
ADYDEGVDKTVQVIDDLDEVSISLTLSSALSDIVTNIKRGFSVQDIMLDANTAAVDVAVS
GDLKSATWSKTSLWAKTPRRFKNYCQVLSFQKFSSGKHYWALETSELGNWRVGVAYPTIE
RKGDSSGIGQNNKSWCLRLCQKDYLVSHNAKEVKLDVDSPLQKVGVYLDYEKGRLSFYQL
SDPIRHLHTFTTTFTEPLHAVLLVWKDGWVRIRN
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgcagacctcaaagacgaactcaactgctccatctgcctccaattttacacg
gagcccgtaaccctgcggtgcgggcacagcttctgccagggctgtatcaggtccgtgctg
gattctcaagaggggtccaaagcctacacctgtccagaatgcagggccgagtacccaaaa
cgccctgccttgcaacgcaacacgaagctttgcaacatagtggagcattttcaaacgacc
caacccaagcagaagaaagctggcgtctattgcacctactgcgtcaactcttccgtcctg
gctgtaaaaacgtgcctgatgtgcgaggcttccttgtgcgacgtccacctaagcgtgcac
agcaaatccacagaccacgtcttgacggaacccaccagttccaccgaaagccgaaaatgc
ccgactcacaaggagatcctgaagtattactgttgcaaggacgcgaaatgtatctgcgtt
tcttgttgcgttttcggagaccaccgggcgcaccatgtggagcttctgaaggaagcctcg
gagaagaagaaagacaggctgagaaaagttttggagaagttgacatcaaagaaagacgag
accgagaaaagcgtccagaacctgcaagagcacagaacggaggtgcaggaaagagcggcg
acggtcaccgcccaagtcactgccctgtttatagacctccgggagcaactcaagacgttg
gaggagcggacactgaccgacatctcccgacagaaagataaagtttcactctcggtctcg
gatctcattcagcagctggaaataaagaaagacgatcttttaaggaagatgtccaacatc
gaggaactgtgcaagatggccgatccgcttactgtactacaagggcgggaattcggccgg
gccgattacgacgaaggggttgataaaacggtccaggtcatcgatgacctggatgaagtg
tccatctccttgactttaagctcagccttgtctgatattgtgaccaatataaaaagaggg
ttcagcgttcaggatataatgttggacgcaaacaccgcggcagtcgacgtcgccgtttcg
ggggacctgaaaagcgctacgtggtccaagacgtccctgtgggccaaaacgccgcgcagg
ttcaaaaactattgccaagtgctgagctttcagaagttcagctcggggaaacattactgg
gcgctggagaccagcgaacttgggaactggagggtcggcgtggcctatccaaccatcgaa
cggaaaggggattcctccggaatcggacaaaataacaaatcttggtgtttacgcttgtgc
cagaaagattatttggtgtctcataatgcaaaagaagtcaagttagatgtggattctcct
ctacagaaagtaggagtatatctggattatgagaagggccgtctgtccttctaccagctg
agtgatcccatcaggcacctccacaccttcaccaccaccttcaccgaacccctccatgcc
gtattgttggtatggaaggacggctgggtgagaatcaggaattag
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