KEGG   Rana temporaria (common frog): 120942898
Entry
120942898         CDS       T07929                                 
Symbol
THOC6
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
rtem  Rana temporaria (common frog)
Pathway
rtem03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:rtem00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120942898 (THOC6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rtem03019]
    120942898 (THOC6)
   03041 Spliceosome [BR:rtem03041]
    120942898 (THOC6)
Messenger RNA biogenesis [BR:rtem03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     120942898 (THOC6)
Spliceosome [BR:rtem03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    120942898 (THOC6)
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40 WD40_CDC20-Fz WDR55 WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I Beta-prop_EML ANAPC4_WD40 Beta-prop_IFT122_1st WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_NOL10_N WDR54 Beta-prop_WDR90_POC16_2nd Beta-prop_SPT8 Beta-prop_HPS5 WD40_like Beta-prop_LRRK2 Beta-prop_DCAF12 WD40_MABP1-WDR62_1st Beta-prop_Vps41
Other DBs
NCBI-GeneID: 120942898
NCBI-ProteinID: XP_040211784
LinkDB
Position
6:1098827..1121425
AA seq 332 aa
MLPAEMDFGRSLELLHMTVFSQCFSPCGKYLAVGNNLGEIGVFSLSSALSSEAKEEHKEP
AALFQAHTGPIYCLSSTERHLISAGDNEVKGWLWTDLCKKGCVPSWSRVAPSRNNLETPE
INSLVRNPADNSLLLGGGSCQVHVMDLETGAFTMALQGHEDYIHCLALREQQRECVSGSE
DGSVRLWDLRTGSQTHKIEVYKYEECARPQYGKWISCLATDSDWMVCGGGPMLSLWHLRS
VTPTTIFPIQESQQQVMFYQDLILCAGQASHINHCQINGEIRTQIPSTPSSIYSMCINET
SQENKVLTAAGSGSKIDVFTNFRYRAFSLTFT
NT seq 999 nt   +upstreamnt  +downstreamnt
atgttaccggcagagatggatttcggtcgctctctggagctcctccatatgacggtgttc
agtcagtgcttctctccatgtggaaagtatttggccgttgggaacaatctgggtgaaatc
ggagtgttcagcctctcctccgctctcagctccgaggccaaggaagagcacaaggagccc
gccgctttattccaagcacacacaggtcccatctactgtctgagttctacagaacgtcac
ctgatcagcgccggggacaatgaagtgaagggatggctgtggactgacctgtgtaaaaag
ggctgtgttccgtcgtggagccgcgtggcccccagcaggaacaatctagaaactccggaa
atcaacagcctggtccggaacccagcggacaattctcttctcctgggaggaggcagctgt
caggttcacgttatggatctggagaccggagcattcaccatggcgctccagggacacgag
gactacatccattgtctggcattgcgggagcagcagagagaatgtgtgtcggggagtgag
gacggctcggtccggctctgggatctccggaccggatcacagacccacaagatcgaggtg
tataaatacgaggagtgtgcccggccgcagtacgggaagtggatcagctgcctggccacg
gactctgattggatggtgtgtggtgggggccccatgctgtctttgtggcatcttcgttct
gtgacaccgactaccatattccccattcaggagagccaacagcaagtcatgttctaccag
gatctgatcctgtgtgccggtcaggcttctcacatcaaccattgccagatcaatggagag
atccgcacccagatcccaagcaccccctcctccatctactccatgtgtatcaacgagacc
tcccaggagaacaaggtcctcacggcggctggaagcggctccaagatcgatgtgttcacc
aacttccggtaccgcgccttctctctgaccttcacatga

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