Rana temporaria (common frog): 120943327
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Entry
120943327 CDS
T07929
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
120943327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtem04121
]
120943327
Enzymes [BR:
rtem01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120943327
Ubiquitin system [BR:
rtem04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120943327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-B_box
zf-C3HC4_2
RING_XB3-XBAT31
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-RING_4
zf-ANAPC11
ANCHR-like_BBOX
zf-UBP_var
MarR_2
U-box
Motif
Other DBs
NCBI-GeneID:
120943327
NCBI-ProteinID:
XP_040212496
LinkDB
All DBs
Position
6:29812827..29816826
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AA seq
523 aa
AA seq
DB search
MASSALGDELSCSICLNLYTEPVSLRCGHNFCRDCIVTVLDTQEGSGVYSCPECREEYVE
RPTLEKNRKLCNIVDNFRSTQQKEEKSEILCTYCVDSPGEAVKSCLHCENSMCDKHLTAH
NKTMDHVLVEPTSSFSSKKCSIHKKLLEYYCSEDAVCLCVSCCLVGKHKGHEVELLEEAL
EKKKEKLRNILEKLTMTKETAEKNVQNLQDQKSKAQEKADDEKKRVTCLFEEIRRQLEVQ
EKRVLSEISRQVEEVSLSLNDLIKQLEIQKDELSRKIGHIEKLCNMTDPITVLQGQESHT
GDQNVEESFVHDLDDFMISLVLHKSITDLITNMQLKNNLYTQDGTDLLLDRKTAFDFVAL
SDDLRTASCSETEQNRPKLPQRFTKYNQVMSMESFSRGRHYWEVEVGDCGDWDVGVCYPS
IKRDGEESSIGDNNKSWSFCKTENKYGYLHDSQKEPLYPESPVQRLGLYLDYEDDRLSFY
QLSDPIRHLHTFTTTFTEPLHAVFYLNKGAWVKLVSPVFSIKQ
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtctgctctaggagacgagctgagctgctccatctgcctgaacctttatacg
gagccggtgtcgctgagatgtggacacaacttctgccgggattgtattgtgactgttctg
gatacacaggaggggtccggagtttattcctgtccggagtgcagagaggagtatgtagaa
cgtcctactctggagaagaacaggaagttgtgtaacattgtggacaacttcagatctaca
caacaaaaggaggagaaaagtgagatcctctgtacgtattgtgtggattctccgggggaa
gctgttaaatcttgtctacattgtgagaattctatgtgtgataaacacctgaccgcccac
aacaagacaatggaccatgtgctggtggaacccacctcgtccttcagtagtaaaaaatgc
tccatccacaagaagcttctggagtattactgctccgaggacgccgtctgtctatgtgtg
tcctgctgtctggtggggaaacataaaggacatgaagtggaacttctagaagaagctttg
gagaagaagaaggagaaactgaggaatattctcgaaaaactgactatgacaaaagagacg
gctgagaagaacgttcagaatctacaggaccagaagagtaaagcacaagaaaaagcagac
gatgagaagaagagagtcacttgcctgtttgaggagatcaggagacagctggaggtccag
gagaagagagtcctgagtgagatctccaggcaggtagaggaggtctcgctgtcactcaat
gatctcattaaacagttggagatccagaaggacgagctgtccaggaaaattggtcacatt
gagaagttgtgtaacatgaccgacccaataactgtcctacaaggtcaggaatcgcacacc
ggtgaccagaatgtggaggaatcttttgttcatgatctggatgattttatgatctcactt
gttttacacaaatctataactgaccttatcactaatatgcaattgaaaaacaatctttat
acacaggatggaactgatctgctactggatagaaaaactgcctttgactttgtggcttta
tctgatgacctgagaacagcatcctgctctgaaacagaacagaataggccaaaattacca
cagagatttacaaaatacaatcaggtgatgagtatggagagtttttcccgtgggagacat
tactgggaagtagaggtcggggactgtggggattgggatgtgggtgtttgctatcccagt
ataaagagagatggagaggagtctagtattggggataataacaagtcctggagtttctgc
aaaactgaaaataaatatggatatctacatgactctcagaaagaaccgttatacccggag
tctcctgtgcagagattgggattatatttggattatgaagatgaccgtctgtccttctac
cagctgagtgaccccatcagacacctccacaccttcaccaccaccttcaccgaacccctc
catgctgtcttctatctgaataagggagcctgggtaaagctggtatctccggtgttttct
atcaaacaataa
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