Rana temporaria (common frog): 120943480
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Entry
120943480 CDS
T07929
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03430
Mismatch repair
rtem03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120943480 (PMS2)
03460 Fanconi anemia pathway
120943480 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtem03400
]
120943480 (PMS2)
DNA repair and recombination proteins [BR:
rtem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
120943480 (PMS2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
120943480
NCBI-ProteinID:
XP_040212740
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Position
6:53958730..54017890
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AA seq
839 aa
AA seq
DB search
MEQPCTEPAKEIKPIDRKSVHQICSGQVVLSLATAVKELLENSVDAGATCIDIKLKEYGA
ELIEVSDNGYGVEEHNFEALTLKHHTSKLQDFSDLINVETFGFRGEALSSLCALSDLSIF
TCHKSANVGTRLVFDQNGKIVQKSPFPRQQGTTVTIQQLFYTLPVRHKEFQRNIKKEYAK
MVQVLQAYCIISTGVRINCTNQVGQGKRTPVVCSSGTSSSMKENIGAVFGQKQLQSLIPF
IQLPLSESVCEEYGLKHTEIPDGFYNITGYLSHCDHGVGRSATDRQYFFINQRPCDPAKV
SKVVNEVYHMFNRHQYPCVVLNISVNSECVDINVTPDKRQILLQEEKLLLAILKTSLLAM
YSGSVNKLNLNNSLVDATGSFRKLSTESSNGGTKEQHVSDKGTLAVSKLREAYSLNQKSL
FGSPQKNADKAQKSSPSQRTLQSFNFSTTVQICDFNTSSHTCDNKKEPGTPNSSGEVIEV
KNDYDSGKGTISSSESEIGLRTPDFSNHLTTESSKSSPETLMKMGKMERFATDDQHPNHE
SEEIFIYPVRNQEINNDSSPDCKRKKTEARYTLSTETLQTDSIDAPVNVIKKMVPLNFSM
CRLAKRMNKLKQRQQKEESEMFRRFRAKISPGENQAAEEELRKEISKDMFSKMEILGQFN
LGFIITKLDSDLFIIDQHATDEKYNFEMLQQNTVLQGQRLIIPQKLNLTAVNEYILMDNL
EIFKKNGFDFTFDEDAPIMERVKLVSLPTSKNWTFGQQDIEELIFMLSDSPGVMCRPSRV
RQMFASRACRKSVMIGTALNLHEMKKLVTHMGEIEQPWNCPHGRPTMRHIASLDIISQD
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaccttgtactgaaccggcaaaagaaatcaagccaatagaccgcaagtctgtc
catcagatttgttctggtcaggtagtgctgagtcttgcaactgcagtgaaagaacttctg
gagaacagtgtagatgctggtgcaacctgcatagatataaaactgaaggagtatggagca
gaactcatagaagtctcagataatggctacggagttgaggaacataattttgaagccctg
actttgaaacatcacacatccaagctacaagatttctctgatttgattaatgtggaaaca
tttggctttcgaggagaagctctaagttcactgtgtgcattaagtgatttgtcaattttc
acctgccataaatcagcaaacgttggaacccgtttggtttttgatcagaatggaaaaatt
gttcagaaatctcctttccctcgacagcagggaactacagtcactatacaacagcttttc
tataccctgccagtgcgccacaaagaatttcagcggaacattaaaaaggagtacgcaaaa
atggtacaagttttacaagcatactgtattatttcaactggtgttcgtataaactgcaca
aatcaggtaggccaagggaagagaacgcctgtggtgtgttctagcggtacatcaagcagc
atgaaagaaaacattggagctgtgtttggacaaaaacagttgcagagtctgattcctttt
attcagctaccgctaagtgaaagtgtttgtgaagagtatggactaaaacatacagagata
cctgatggtttctacaatattacaggatacttatctcattgtgatcacggtgtgggaaga
agtgcaacagacagacaatatttcttcatcaaccagcggccatgtgatcctgctaaggtt
tccaaggtagtgaatgaggtttatcatatgttcaacagacatcagtatccatgtgttgtt
ctcaacataagcgtcaattccgaatgtgttgatatcaatgtcactcccgacaaaaggcaa
attctcctgcaggaagaaaagcttttactggcaatattgaagacctctcttctggctatg
tatagtggcagtgttaataaactaaatttaaataattccctggtggatgccacaggtagt
ttcagaaaactaagtacagaatcatctaatggaggtacaaaagagcaacatgtatcagac
aaagggacacttgctgtttctaaacttagagaggcctattctctcaaccagaaatcatta
tttggatcaccacaaaaaaatgcagataaagcccagaaatcttcccccagtcagaggacg
ctccagtcctttaacttttctacaacagtgcaaatatgtgactttaacacatcatcacac
acgtgtgataataaaaaagaaccaggaacaccaaactcttctggcgaagttattgaagtg
aaaaatgactacgactctggcaagggaaccattagtagttcagaaagtgagataggccta
cgtactcctgatttttctaaccacctaactactgaaagttcaaagagttccccagaaaca
ctaatgaaaatgggaaaaatggagcgatttgcaactgacgatcaacaccctaaccatgaa
agcgaggagatatttatttatcctgtccgaaatcaggaaataaacaatgattcttctcca
gactgtaagcgtaaaaaaactgaagccagatatactttaagtactgaaacattgcaaact
gattccatcgatgctcctgttaatgttattaagaaaatggtgcccttaaatttttcaatg
tgtcgcctggccaagagaatgaataaattgaaacaacgtcaacagaaggaggagtctgaa
atgtttcgcaggttccgagcaaagatcagtccaggggaaaatcaggctgcagaagaagag
ctcagaaaagaaatcagcaaagacatgttttcaaagatggaaatacttggccagtttaat
ctgggattcataataaccaagttggactctgaccttttcattattgaccagcatgcaaca
gatgagaagtacaactttgagatgttacagcagaacactgtgttacaagggcaaagactt
atcatacctcagaaactaaatttaactgcagtcaatgagtatattcttatggacaatctg
gaaatattcaagaaaaatgggtttgattttacctttgatgaggatgctccaattatggaa
agagtcaaattagtttctttgcctacaagtaaaaactggacatttggccaacaggacata
gaggaacttatatttatgcttagtgactccccaggcgtgatgtgtagaccctctcgtgtt
aggcagatgtttgcctctcgagcatgcaggaagtctgtgatgatcgggacagcattaaac
ctgcatgaaatgaagaaactggttacacacatgggggagattgaacaaccgtggaactgc
ccacatgggagacccacaatgaggcacattgccagtctggatattatttcacaagactaa
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