Rana temporaria (common frog): 120943675
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Entry
120943675 CDS
T07929
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04140
Autophagy - animal
rtem04148
Efferocytosis
rtem05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120943675 (VPS16)
04148 Efferocytosis
120943675 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
120943675 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtem04131
]
120943675 (VPS16)
Membrane trafficking [BR:
rtem04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120943675 (VPS16)
Hops complex
120943675 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
GCN5L1
Motif
Other DBs
NCBI-GeneID:
120943675
NCBI-ProteinID:
XP_040213033
LinkDB
All DBs
Position
6:104272087..104488123
Genome browser
AA seq
838 aa
AA seq
DB search
MDFCTANWYPLGDVYYRKFELYQMEWNVREEFKDCLVAVGPYGGSIALMKNYLTKEKPSS
SRPILETYSASGVLLATIPWKSGQVVHLGWTVSEDLMCIQEDGTVLIYDIFCVYKRSFSL
GNEIKQNQILEAKVFHSEYRTGIAVLTGALNFTLTSNIDDVKLRRMPEMPNPKVLPSCWT
ILFQDRITLILLAIGNDLYLLDNTACSLVTLPGMSPMCGAYLNFSVSFHHKYLAVFTDSG
YIWMGMSSLKEKLWEFTSDTRQAPKQMAWCIRPQSKQIAVVVMWDKMLLVAGKGNDGIQF
SLDEETFMVLELDGVRLISHSTHEFLHEIPKATEEIFKIASMAPGALLMEAQKEYEKQSQ
KADDYLREIKDQNLLPVAVAKCIEAAGYEYAPEMQKSLLRAASFGKCFLDSYSPSDFVTI
CRDLRVLNAINDYQIGIPLSITQYKQLTIPVLLDRLVLRRLYPLAVKICEHLKQPDSQGV
SRILAHWACYKVQQKEKTDEEVAQAINQKLGDAAGISYSEIASKACDCGRTELAIKLLEY
EPKSEDQVPLLLKMKRSNLALGKAIESGDTDLVYTVVSYMKHEFNRGDFFMTLQNHPVAL
SLYQQFCKHQEPETLKDLYNQDDNHQELANFHVRASYSTEKSVEGRVAELQNAVDEYNRA
KNDWAAKVTEDQIKLLRIQRVLREQLNKPYLNYSLHETVYNLILDNMQKKAEQLYKEFKI
PEKRYWWLKLTALAEKNDWDELENFSKSKKSPIGYLPFVEICMKEKNKSEAKKYIARVNP
EQRVKALLLTGDLEQAAEAAIEHKNENEMNMVLSKCNSAADSVAAEKIERAKVLLLKK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggatttctgtaccgctaactggtaccctctgggggacgtgtattaccgtaagtttgaa
ttgtatcaaatggaatggaatgtcagagaagaatttaaagattgtcttgtggcagttggt
ccatatggaggatcaatagccttgatgaaaaactatttgacaaaagagaaaccgagcagt
tcacgtcccattttagaaacgtactccgcatctggtgttcttttagccacaattccgtgg
aagagtggacaagtggtgcacctgggatggacagtatctgaagatctaatgtgtattcag
gaagatggaactgtattaatatacgacatcttttgtgtatataaacgctcttttagcctg
ggaaatgaaattaaacagaaccagattctggaagccaaggtgtttcattctgaatataga
actggaattgcagtattaacgggagctttgaactttactctgacttcaaatattgatgac
gtaaaactgcgccggatgccagaaatgccaaatcctaaagttctaccatcatgttggact
attctttttcaggacagaataacattaattttgctagctataggcaatgatttgtacctg
ctggataacacggcatgctctcttgtaactcttcctggaatgagcccaatgtgtggagca
tatcttaatttttctgtttcttttcatcataagtatcttgcagtctttacagatagtgga
tacatttggatgggaatgtcttcactcaaggaaaaactttgggagtttacttcagacact
cggcaggcacccaagcaaatggcctggtgcatcaggccacaaagtaaacaaattgcagtt
gtagtaatgtgggacaaaatgctccttgtagctggaaaaggaaatgatggcatacagttt
tcattggatgaagaaaccttcatggttctggagcttgatggtgtcagacttatttctcat
tccacacatgaatttcttcatgaaatcccaaaggcaacagaagagattttcaagatagct
tcgatggccccaggtgcactcttaatggaggcacaaaaagaatatgagaaacaaagccag
aaggccgatgactatctccgtgaaataaaggatcaaaacctgcttcctgttgcagtagca
aagtgtattgaagcagctggttatgaatatgcaccagaaatgcaaaaatctttgcttaga
gcagcctcctttgggaaatgctttcttgattcctattcaccttcagattttgtgacaatt
tgccgtgatcttcgtgttctcaatgctattaatgactaccagattggaatccctctgagt
atcacacaatataagcaactcacaattccagtgctacttgataggttagttttaagaaga
ctctatcctcttgctgtaaaaatttgtgaacacttaaaacagcctgactctcaaggagtg
agccgaattctagcgcactgggcatgttacaaggttcagcagaaagagaaaacagatgaa
gaagtagctcaggccatcaatcaaaagcttggcgatgctgcaggcatttcatattcagag
attgcttcaaaggcatgtgactgtggcagaacagaattggctattaaactgttggagtat
gagccaaagtcagaggatcaagtgccattacttttaaagatgaaaagaagtaatcttgca
cttggcaaagctattgaaagtggagacactgatcttgtgtacactgtggtgtcatacatg
aaacatgaatttaaccgtggagatttcttcatgaccttgcagaaccacccagttgctctc
agtttatatcaacagttctgcaaacatcaagaaccagaaactttaaaagatttatacaat
caagatgataatcatcaagaacttgcaaattttcatgtacgagctagctacagcaccgaa
aagagtgttgagggccgtgttgcagagctgcagaatgctgttgatgagtacaacagagca
aaaaatgattgggctgccaaggtaacagaggatcaaattaaattgctaaggattcagcgt
gtactacgtgagcagcttaataagccttatctgaactactctttacatgaaaccgtctac
aacttgatacttgataacatgcagaaaaaagctgaacagctttataaagaatttaaaatt
cctgaaaaaaggtactggtggctgaaactaactgctctggcagagaagaatgattgggat
gagttggagaacttttcaaaaagtaaaaaatctcccataggatatttgccgtttgttgaa
atttgtatgaaggaaaaaaacaagtccgaagcaaagaaatatattgctcgcgtaaaccct
gaacagagggtcaaggctcttcttttaactggagatttggaacaagctgcggaagctgcc
attgaacataaaaatgaaaatgaaatgaacatggtcttgtcaaaatgcaattcagctgct
gattctgttgcagcagagaagattgaacgtgctaaagtcttgctgcttaaaaaataa
DBGET
integrated database retrieval system
