Rana temporaria (common frog): 120943827
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Entry
120943827 CDS
T07929
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120943827 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtem04131
]
120943827 (VPS8)
Membrane trafficking [BR:
rtem04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120943827 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Clathrin
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
TPR_Vps41
WD40_CDC20-Fz
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-RING_UBOX
zf-RING_11
Beta-prop_HPS5
Beta-prop_WDR5
WDR55
zf-RING_2
Beta-prop_WDR3_1st
Motif
Other DBs
NCBI-GeneID:
120943827
NCBI-ProteinID:
XP_040213310
LinkDB
All DBs
Position
6:131208375..131504864
Genome browser
AA seq
1457 aa
AA seq
DB search
MESDPGEDDLSAKSWDSRKLASEGTGSLTNLEDELNRSQTRLGYLDVDKELESKHDLIDD
KEFDIPQVDTPPTLESILNETDDEDETFIPEDPALLNIETIDTYSCDTSSLASSDSGDRA
HKRKKKLPDAFSRHGAVLRHMLLKGVSAQIVSAADKVDAGLPTAIAVSNLIAVGTSHGLA
LIFEGKDANQALRLCLGSTAVGAQYGAVSALSINNDCSRLLCGFAKGQITMWDLASGKLL
RSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRSCESRCLFSGSKGE
VCCIEPLHTKAELRDHPIAQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLL
AWHFVILQGALNPMLAFCRGDVVHFLLVKRDESGAIHINKQKQLHLHYDLINFTWINART
VALLDSAEKLHVIDRQTQEELETLEISDFQLVYNSSHFKSLATGGNVSQALALVGEKACY
QSISSYGGQIFYLGTKSVHAMMLRNWRERVDHLLKQDCYNEALALAWSFHEGKAKAVVGL
SGDPKKRKSVVADKIVEILLQYTDKALRKCPEQGKIQVMEQHFQDTVPVLVDYCLLLQRT
DILFSQMYDKLCENCVARGVFLECLEPYLLRDQLPGLTTHVMKDLLLHFQDRGLMESLEA
CIVHMDITSLDIQQIVQMCWEHRLYDAMIFVYNSGTNDFISPMEKLFKSISAPIGSGKSL
TDEQVVMGNKLLVYISSSLAGRAYPLGDIPEDLVPQVKNQVFEFLIRLHSPEAPSDEEVY
PYIRTLLHFDTREFLNVLALTFEDFTNDKQAVEHQQRIVDILLKVMVENSDFTPSQVGCL
FTFLARQLAKPDNTLFVNRMLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGVVQFEEN
RLIQLAERAQFYQICEFMYERKHLYDKIIDCYLQDPIRKQVYVKTNHYCEDGSACLDELQ
SQEIFNYIHNILSIPGYSPEEKQATWDKVMKHMEELVALSPSKAADLVCTHFGEQLSEVI
EKLQETLLLFQFLRSLLDPRDGVQLNPELLQNQPHVTELFIDLMCQYDPGHVTSMLQILE
HYRLEETIQIAQKHNNHETLAYLLEKKGDIQAAFEVMLTRLQERLSALTTDFVDGGDQIK
ETDILKDVRETLSETILLCERTSRTLNQQQREALWFPLLEAMMSPQKLLSSSQLYLDSLK
NLTMDVLNSMAAYISLPSILQRILQDPVYGKGKLGEIQGLVLGMLDTFSYEQTLLETTTS
LLNQDLHWSLRNLKASVTKALAPKQDHCCICLQQYKKRQEGTDEILVFSCGHLYHSLCLT
GKHCKVEVGGQSHWICYRCHSTSKGRTGCQSLAEMKRGRAASLVQVRSASAHPSKEESAR
KSSSDSVLDPHQLQAFNELCRLYKGTSRLALLTELCRSQSPEKSLSYHPSYGGVASSSVF
QNENFQLHLAPPPIVDD
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atggagtcagaccctggagaggatgacctcagtgccaagagctgggactcacggaaactt
gccagtgaaggcacaggatcgcttaccaatcttgaagatgagctgaataggtcccaaacc
cgcctagggtaccttgatgtagacaaggagctggaatctaaacatgatttgattgatgat
aaagagtttgacattcctcaagttgacactccaccaacactggagagcatcttgaatgag
acagatgatgaggatgaaaccttcataccagaagatcctgcgctactgaacatcgagact
attgacacctattcctgtgacacctcatcattggccagctctgatagtggtgaccgagca
cataagagaaagaagaagctaccagatgctttttcccgccatggagctgtgctgcgccat
atgctgctcaaaggcgtctctgctcagatcgtgtctgctgcagataaagtagatgctggc
cttcccacagctatagctgtctctaatctaattgcagtgggaacttctcacggtctggct
cttatatttgaaggcaaagatgcaaaccaagccctccgtctctgtctgggaagcactgcg
gttggtgcacaatatggcgctgtttcagctttaagcatcaacaacgactgttccagactt
ctctgtggctttgcaaaaggacagattacaatgtgggatctggctagcggcaagctcctg
cgatctataactgatgcccacccacctgggacagccattctgcacatcaagtttacagat
gacccaactcttgcgatctgcaatgacagtggaggatctgtatttgaactgactttcaag
cgagtaatgggagtaagaagctgtgaatccagatgtctgttcagtggatccaagggagaa
gtttgctgtattgagcctttgcatacaaaagctgaactgagagatcaccctattgctcag
tactctcttttggccatggcatccttgactaagatactggtaattggcttgaagccatct
ctgaaagtttggatgacttttccttatggacggatggatccttccagtgtcccacttcta
gcatggcattttgtgattctgcagggagctttgaaccccatgctggcattctgcagaggg
gatgtggtgcattttcttttggtgaagagagatgaatctggagcaattcacataaacaag
cagaaacagcttcacttgcactatgatcttatcaacttcacatggattaatgcacgcaca
gtggctctcctggatagtgctgagaaactccatgtgattgacaggcagacacaggaggag
cttgagactcttgagatttctgatttccagcttgtgtacaacagcagccacttcaaatct
ttggccaccgggggtaatgtcagccaggctttggctctagtaggagaaaaagcttgctat
cagtcaatcagcagttatggaggacagatattctaccttggaactaagtcagtccatgca
atgatgctcaggaactggcgagagagagttgatcatttgctgaaacaagactgctacaat
gaagccttggctctagcatggtcatttcacgaaggcaaggcaaaagctgttgtgggtctt
tctggggatcccaagaaaaggaagagtgttgtggctgataagatagttgaaatcttgctg
cagtatactgacaaagcattgaggaaatgtccggagcaaggcaaaatccaggtcatggaa
cagcatttccaggacacagtaccagtattggttgattattgcctgcttctgcaacgcacg
gatatcctctttagtcagatgtatgacaagctctgtgagaactgtgtagccagaggagta
ttcttggagtgtttagagccttatcttctccgggaccagttaccaggtcttactactcat
gtcatgaaggatctgctgctccattttcaggatcggggcctgatggaaagtttggaggct
tgtatagtgcacatggacatcaccagccttgacatacagcagattgtccaaatgtgctgg
gaacacagactatacgacgcaatgatttttgtgtacaatagtgggacaaatgattttata
agcccaatggagaaattgttcaagtccatttctgcaccaatcggctctgggaaatctttg
acagatgagcaagttgtgatgggaaacaagcttcttgtttatattagctcaagtttggct
gggcgagcgtatcctttaggtgacattccagaagaccttgtcccacaagtgaaaaaccag
gtttttgagttcctaatacgtttacattctccggaggctccctctgatgaagaggtgtac
ccctatatccggacactgttgcactttgacacaagagagttccttaatgttttggcactg
acattcgaagattttactaatgacaagcaagcagtggaacaccagcagcgaatagttgat
attctgttaaaggttatggtggagaactctgattttactccttcccaggtgggctgtctc
ttcacatttcttgcccggcagctcgctaagccagataatactctgtttgtcaaccgaatg
ctgtttgaccaggtcctagaatttctgtgcagtccagatgatgattccaggcattcagaa
agacagcaggttcttttagagctgcttcaggctggaggagtagtccagtttgaggaaaac
agactgatccagctagcagaacgagctcagttctatcagatctgtgagtttatgtacgag
aggaagcacctatatgacaaaattatagactgctatttacaagacccaataagaaagcag
gtatacgtgaaaaccaaccactactgtgaagatggctctgcatgtttggatgaacttcag
tctcaagaaatctttaattatattcacaacattctttcaatcccgggctacagtcctgag
gaaaaacaggcaacatgggacaaagttatgaaacatatggaggagctggtagcactaagt
ccaagtaaagcagctgacctggtgtgcactcactttggtgagcagctaagtgaggtcatt
gaaaagctccaggaaacattattactgttccagtttcttagaagtcttttggatccaagg
gatggtgtgcagttaaatccggagctgctgcagaatcagcctcacgtcacagagcttttc
atagacctgatgtgccagtatgatcctgggcatgtgacttcaatgctgcaaatcctggag
cattacagattagaagagaccattcagattgcacagaagcataataaccatgagaccttg
gcttacctcttggagaaaaagggagatatccaggcagcttttgaagttatgcttacgagg
ctgcaggaaagactttcagcactgactacagattttgttgatggaggcgatcagataaag
gaaacagatatcttaaaagatgtgagggaaactttatcagaaacaattttattgtgtgaa
agaacatctcgtacactgaaccagcagcagagagaggcactatggtttcctctgcttgaa
gcaatgatgtctccacagaagctcttaagttcttctcagttatatttggactctttaaag
aatctcacaatggatgtcctcaacagcatggcagcctatatctcccttccatccatactc
cagagaatattgcaggatcctgtgtatggaaaaggaaagttgggagaaatccaaggcttg
gtcttaggaatgcttgataccttcagctatgagcagaccctgctggagaccaccacaagc
ttgctgaaccaggacttacactggtcgctgcgtaacctcaaagcttctgttactaaagct
cttgctccaaaacaggaccactgctgcatctgccttcagcagtacaagaagagacaagag
ggcacagatgagatcctcgttttcagctgtggacatttataccactccctctgcctgacg
ggaaagcactgcaaggttgaagttggtggacagagtcactggatctgttaccgatgtcat
tcaactagtaaaggtcggacgggttgccagtcgttggctgaaatgaagagagggagggca
gcatctttagtccaggtgagatctgcttcagcgcatccatccaaagaggaatctgcaaga
aagtcaagctctgattccgtcctcgacccacatcagctgcaggcattcaatgaactctgc
cgtctttataaaggaacctcacggcttgctttattgacagaactatgccgatctcagagc
ccagaaaaatccttatcatatcatccatcctatgggggtgttgcatcaagcagtgttttt
cagaatgagaacttccagttacatctggcaccccctccaatcgttgatgattaa
DBGET
integrated database retrieval system
