Rana temporaria (common frog): 120943872
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Entry
120943872 CDS
T07929
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120943872 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120943872 (BARD1)
04121 Ubiquitin system [BR:
rtem04121
]
120943872 (BARD1)
03036 Chromosome and associated proteins [BR:
rtem03036
]
120943872 (BARD1)
03400 DNA repair and recombination proteins [BR:
rtem03400
]
120943872 (BARD1)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
120943872 (BARD1)
Ubiquitin system [BR:
rtem04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
120943872 (BARD1)
Chromosome and associated proteins [BR:
rtem03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
120943872 (BARD1)
DNA repair and recombination proteins [BR:
rtem03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
120943872 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_4
Ank_5
Ank_3
BRCT
BRCT_2
Ank_KRIT1
zf-C3HC4_2
zf-RING_5
zf-C3HC4
RTT107_BRCT_5
zf-RING_2
ANK_LRRK2
Prok-RING_4
zf-C3HC4_3
PTCB-BRCT
zf-RING_UBOX
zf-RING_10
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
120943872
NCBI-ProteinID:
XP_040213415
LinkDB
All DBs
Position
6:complement(144013068..144133905)
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AA seq
799 aa
AA seq
DB search
MALRVRSGNRPPDRGDPDTVQHMAEWSRTREALRELEGRLHCSVCLLMLKQPVCLGGCEH
VFCRTCVDDHVGNECPLCHTPAWVKDVHINRQLDNIIQLCSKLNGILDKGKQDENKMDLC
QDASLKSSTTEGECNKKQIKMWFSPRRGKARYVLEREVNQQIPLKHEQIPELETYEFVSS
SPTMEPTKKKEKNNSKRRKSKKKILEDINQEWGVGTQTQNSDDGKESNVSNNIRSVSFCN
SPVVLTSPSEQENGQKCDSPIRNNRTRNETSFKEHAETESKNTENLPEVTLLESQCSVPV
SNNIVFKSLSEQGCDAKDGEVDESNQHGDKNGVDDFEDKASNKKVLRSARQKNVTSKRET
KVLKRKERTSPSPVSSISKRSRKEPQKPGGSCKSEKIEISDPNPEQPKLLSKPSTPSSKN
KDGRRTSQTSTSIQMSPNNLSVSKKNIRGETLLHVASIKGDLKGVEELLKNGANPNVKDN
AGWTPLHEACNHGHSDVVELLMQYQALVNTTGYQNDTPLHDAAKNGHVAIVRLLLSHGAS
PDAVNIFGRRPVDYAETEAIKLALLQAQKNKEPLVKLPCSGLNRRQCREEAVVLLASGLS
ASQKTNLAKLAALLKAEICSNYNSSVTHLIVGEDPMLRTLKCMMGMIAGCWILQYSWVKA
CLESRGQEPGEEAHEIKGGPHRARLNREQLLPKLLDGCHFYFLGSFKEHKKEDLTELVKA
AGGQILNRQPKPDSDVTQTINTVAYHADADSDQRFCTQYIIYDKTSKYVPRIVRQGKVWF
APSNWLIDCITCFQLLPVQ
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggctttacgcgtccgatccggtaaccgacctccggacagaggggaccccgacacggtc
cagcacatggctgaatggagccggacccgagaggcacttcgggagctggaggggagactg
cactgctctgtatgcttattgatgttgaagcagcctgtgtgcttgggtggatgtgaacat
gtgttttgtaggacttgtgtggatgaccatgttggaaatgaatgccccttgtgccacaca
ccagcctgggtaaaagatgtgcatatcaacaggcaacttgataatattattcagctatgt
agtaagctaaacggcatactggataaaggaaaacaagatgaaaacaaaatggatttatgt
caagatgcatcactcaaatcaagcaccaccgaaggagaatgcaataaaaaacagataaag
atgtggtttagccctcgtagagggaaggcaaggtatgtcttagaaagagaagtcaatcaa
cagattcctttaaaacatgaacagattccagaattggaaacatacgagtttgtgtcatct
tcacctactatggagcccacgaaaaagaaagagaaaaataattcaaaacgaagaaaatcc
aaaaagaagatactagaagatatcaaccaagaatggggagttggcacacaaactcagaac
agtgacgatggcaaggaaagtaatgtttcaaataatattagatctgtctcattttgcaat
tctcctgtagttttaacatctcctagtgaacaagaaaatggccaaaaatgtgattcacca
ataagaaataatcggactagaaatgagaccagctttaaagaacatgcagaaacggaatct
aaaaatactgaaaacctgcccgaggtcactctgttggagtcccaatgttctgtgccagtt
tctaacaatattgtatttaagtctctatctgagcaaggctgtgacgctaaagatggcgag
gtagatgaaagcaatcaacatggggataagaatggagttgatgattttgaagacaaagcc
agtaataaaaaagttttacgaagtgcaaggcaaaaaaatgtaacttcaaaaagagaaact
aaggtcttaaaacgtaaagaacgcacatctccttctccagtttccagtatctcaaaacgt
tcaagaaaagagcctcagaagccaggaggcagttgtaagtctgagaagatagaaataagt
gatccaaacccggaacaaccaaaattgctttccaagccttccacaccctcttctaaaaac
aaagatggaagaagaacaagccaaactagcaccagtatccagatgtctccaaataacctt
tcagtttctaagaaaaacatcaggggagagacattgcttcatgttgcttccataaaggga
gacctgaagggagtggaggagcttctcaagaatggagccaaccccaatgtgaaagacaat
gctggctggacacctttgcatgaagcttgtaatcatggacactcagatgtggtagaacta
ttgatgcagtaccaagctctagtgaataccactggctaccagaatgacactcctttacat
gatgctgcaaaaaatggccatgtagccattgtccgactattgctgagccacggagcatcc
ccagatgcagttaatatattcggtcggcggcctgtagactatgcagaaacagaggcgata
aagttggctttgctgcaagcacagaaaaacaaggagccacttgtgaagctgccatgctct
ggcctgaacagacgccaatgtagagaagaagctgttgtccttttggctagcggcctgtca
gcctctcaaaagactaatcttgccaagcttgctgcacttctaaaggcagaaatctgctct
aactacaacagttcagtaactcaccttattgttggggaggatcccatgctccgtacctta
aagtgcatgatggggatgatagccggctgctggatccttcaatattcttgggtgaaggcc
tgcctagagtcacgtggccaagagccaggagaagaagcacatgagataaagggtggacct
cacagagctcgactcaaccgagaacagctgcttcctaaactactggatggatgtcatttt
tatttccttggatccttcaaagaacataaaaaggaagacttgacggagctggtcaaagct
gctggaggacaaattctcaatcgccaaccaaagcctgatagtgatgtgacccagactatt
aacactgtagcttaccatgctgatgctgactctgatcaaaggttctgcactcagtatatc
atttatgataagacttccaaatatgtcccacgcatagtacgccaagggaaggtctggttt
gcgccctcaaattggcttattgactgtattacctgctttcagctgctccctgtgcaataa
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