Rana temporaria (common frog): 120943933
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Entry
120943933 CDS
T07929
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04510
Focal adhesion
rtem04512
ECM-receptor interaction
rtem04518
Integrin signaling
rtem04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120943933 (COL6A2)
04518 Integrin signaling
120943933 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120943933 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120943933 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtem04147
]
120943933 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
rtem00536
]
120943933 (COL6A2)
Exosome [BR:
rtem04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120943933 (COL6A2)
Glycosaminoglycan binding proteins [BR:
rtem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120943933 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
120943933 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
NAD_binding_10
WHD_GTF3C1
Motif
Other DBs
NCBI-GeneID:
120943933
NCBI-ProteinID:
XP_040213543
LinkDB
All DBs
Position
6:complement(151829450..151889021)
Genome browser
AA seq
1018 aa
AA seq
DB search
MAKLHVLCLLLATTFGSLWAQNGDQKSCADKTKCPVNVFFIIDTSESIILQTAPIQSLLD
HMKRFIPAFLAKLENAAYQDQILLNWVYGGLHYSDEVQIYSQLTADKNEYISRLRGIQYI
GRGTFTDCAISNMTALIDAAIRAQATQGQDVVNFAVVITDGHVTGNPCGGVKAQVEAAQS
KGIKLFSVAASRDVYESGLREIASQPYELFRNAYTVTNPNDQTEIDQKTIDKIIQVMKHE
AYGECYKLNCLEIPGPPGVDGQRGQKGAKGNAGEPGGFGPKGRQGDPGIEGPIGYPGPKG
VSGLKGEKGDFGADGRKGSGGVAGRNGTDGQKGKTGRIGSPGCKGDPGDKGPHGYAGDAG
DRGDDGDAGPKGDAGRSGRNGPPGPFGEKGDKGLGGNSGAPGGTGIKGNKGGPGTSGPKG
EPGRRGDPGTKGGAGTDGPKGEKGDPGSEGPRGLGGEAGLKGAKGDRGAPGPRGGQGTVG
VPGKNGSRGDPGDMGERGNPGASGPKGDRGRPGISYPGPRGPPGDKGDKGPPGPLGGRGD
FGQKGASGPKGVKGEFGDKGSTGEPGPRGPSGESGGEGDIGPPGDPALTECDVMTYVRET
CGCCDCEKRCGALDLVFIIDSSESIGYTNFTLEKNFVINVVSRLGSFAKDPNSDIGARVG
VVQYSHEGTFEAIQMNDPSIDSLSSFKEAVRRLEWIAGGTWTPSALQFAYNTLIKETRRN
KANVIAVVITDGRHDPRDPDDGLKSLCDVDVTVNAIGIGDMFHKEDDLETLTSITCDKPQ
QIQKMKLFSELVADEFIDTMEKQLCPDPQIVCPDLPCQSELAVAQCTQRPVDLVFLLDSS
ERIGAQNFKQAASFVEEVSRQLSLSKKDDDTANARVALVQYGGKKEQAVAFSLTYNLTEI
SQGLSRLTYFDSSSNIGDAIIYAINNILQDKTRGARRFAETSFVLITDGVTADEDLKEAV
TAMKKNNVVSTLVSVGTDLDIPVLKQLSLGESAAIFKEKEYARLTENAFLDRFVRWVC
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggccaagctccatgtgctgtgtttgctgcttgccaccacatttggctctctgtgggca
cagaacggtgatcaaaaatcatgtgcagataaaaccaaatgtccagtcaatgtgttcttc
atcattgatacatccgaaagtataattctacagaccgctccaattcagagcttgctggat
catatgaagcgtttcattccagccttcttggcaaagctggagaatgctgcctaccaggac
cagatccttctgaactgggtgtatggtggtctgcattattcagatgaggtccaaatctac
agccaacttactgccgacaagaatgaatatatttcacgactgcgtggaatccagtatatt
ggacggggcaccttcactgactgcgccatttctaatatgacagcactaattgatgctgca
ataagggctcaggctacccaaggtcaggatgtggtcaattttgcagtagtgatcacagat
ggtcatgtgactggaaatccatgcggaggagtgaaggcacaggtggaagcagcccagtct
aaaggcatcaagctgttctctgtagctgcaagtcgtgatgtgtatgagtctggtctcagg
gagattgcaagccaaccctatgagctgttcaggaacgcatatacagtgaccaatcccaat
gaccaaactgagatcgatcagaaaaccattgacaaaatcattcaagttatgaaacacgaa
gcttatggagagtgctataaactgaactgcttggagattccaggtccccctggtgtagat
ggacagagaggacaaaagggtgccaaaggaaatgctggtgaacctggaggctttggacca
aaaggacggcagggagaccctggaattgaaggaccaattggatatcctgggcccaagggt
gtttcagggttgaaaggtgaaaagggagattttggagcagatggaagaaagggatcaggt
ggggtggctggaagaaatggtacagatggacagaagggtaaaacgggtcgaattggttct
cctggctgtaagggtgatcctggagataagggccctcatggctatgcaggagatgctgga
gacagaggagatgatggagacgctggaccaaagggtgatgctggaaggtctggacgtaac
ggaccgccagggccattcggagagaaaggagataagggtctcggtggaaattctggggct
cctggaggaacaggtataaaaggaaataaaggaggacctggaacatcaggaccaaaagga
gagccaggtcgcagaggagatcctggtaccaagggaggtgcaggtactgatggacccaaa
ggagagaagggagatcctggttcagagggtccacgaggacttggtggagaagctggccta
aaaggagcaaagggtgatcgtggagctccgggaccaaggggagggcagggaacagttgga
gtgcctggcaaaaatggttcacgtggagacccaggagacatgggagaaagaggaaacccg
ggagcatcaggacctaagggagacagaggaagacctggtatcagctacccaggaccacgg
ggacctccaggtgataaaggagacaaaggaccaccaggacctctgggaggacgtggcgac
tttggacaaaaaggagcctctggacccaaaggagtgaagggggaatttggcgacaaaggt
tccacaggagagcctggcccccggggaccatctggggaatctggaggcgagggtgacatt
ggacctcctggtgaccctgccttgactgaatgtgatgtcatgacatacgtacgagagaca
tgtggatgctgtgactgtgaaaagcgctgtggtgctctggaccttgtcttcattattgac
agctctgaaagtattggctacaccaactttactctggagaagaactttgtcattaatgtt
gtaagcagactaggatccttcgccaaagatccaaactcggacataggtgctcgagttggc
gttgtccagtacagtcatgagggtacatttgaggctattcaaatgaatgatcccagcatt
gactctctgtccagctttaaggaggcagtgaggcgtctggaatggattgctggaggaaca
tggaccccgtctgctctgcagtttgcttataatacactaatcaaagaaacaagacgtaac
aaagccaacgttattgcagtagtgatcactgatggtcgtcatgacccaagagaccctgat
gatggcctgaagtcactgtgtgatgtggatgtcacagtcaatgctattggcattggtgac
atgttccacaaagaagatgatttggagaccctgacatccatcacctgcgacaagccacag
caaattcagaagatgaaacttttctctgaactggttgctgatgagttcatagacaccatg
gagaagcaactgtgcccagaccctcagattgtgtgtccagacctgccatgtcaatcagag
cttgccgttgctcagtgcacacagcgcccagtggatctcgtcttccttctggatagctct
gagaggattggagcacaaaacttcaaacaagcagcatcctttgtggaggaggtctcaaga
cagctgtcactgtcaaagaaggacgatgacacagctaatgcccgtgtggcccttgttcag
tatggtggaaaaaaagagcaggctgtggcattctctcttacctacaaccttactgagatt
tcccaaggtctttcacgtctcacctactttgactcatcctcaaacattggagatgccata
atttatgccatcaacaacatccttcaagataaaaccagaggagcacgacggtttgcagag
acctcttttgtcttgatcactgatggtgttactgctgatgaagacctgaaagaagctgtc
acagcaatgaagaagaacaatgtggtctctactctggtctctgtgggaacagaccttgac
ataccggttctaaagcagcttagtttaggtgagagtgcagccatctttaaagagaaggaa
tatgccaggctgactgaaaatgccttcttggacagatttgtgcgttgggtgtgctaa
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