Rana temporaria (common frog): 120943939
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Entry
120943939 CDS
T07929
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rtem04147
]
120943939 (COL18A1)
00535 Proteoglycans [BR:
rtem00535
]
120943939 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
rtem00536
]
120943939 (COL18A1)
Exosome [BR:
rtem04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120943939 (COL18A1)
Proteoglycans [BR:
rtem00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
120943939 (COL18A1)
Glycosaminoglycan binding proteins [BR:
rtem00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120943939 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
120943939
NCBI-ProteinID:
XP_040213558
LinkDB
All DBs
Position
6:complement(152317735..152560991)
Genome browser
AA seq
1590 aa
AA seq
DB search
MARARLCPVLAVLLLVVTLPALSQAQFLNWLGWGAKPTILATPTAKITTDSAILATTTTA
APNSSATSSPEGSSLPAAVTVVDNETSSTGRDEKDLTPATSPSSQPAATASLSAGVSSPS
NQTSVPAAAATTNPNALTTHKQPVGTGTTEASLNRQLRIPESPETVKKPPENQIFSIFQV
QEEELSSGSDAQPATPTSKNVPTSAPEASTTHKSEDKNIAGVGAEILNVAENIRNFMNVW
EEKAKDLMTSTDNPPAEQGLGELINMTLPTNQSGDLSQYGTGQADSANTTETHARSQLAL
SNNQTLNVTQVPSGNVTSAQPDRENVEVGLLQLIGDPPPEEITKIFGPDRTPGYVFGEDA
NTGQVAQYHLPSPMFRDFSILFHIQPTTTKAGMLFSITDASQSIVYIGVKLSEVKDGKQQ
IIFFYTEPGSTVTFPAATFSVPALTNQWTRFALSVEEEEVALFMECNELKRVRFERSPDE
MELEDGSGLFVAQAGGADPDRYQGVIAEIKIKNDPRAAELQCEEEGDDSDGASGDFGSGL
SEEEVVEVTRAPKVIAVAPMTVPPIQRPSVVNEPKVIKEVQETIQRVEVSGKPGQKGEKG
DLGDRGMKGEIGPFGPKGEIGDSTSAGIGPKGDKGQKGELGVKGDAGFGYNGPKGQKGDP
GASGPPGPPGVSGPSVVQKADGSTVQQITGPRGPPGPEGPPGKEGEPGDPGEDGKAGEVG
PQGFPGTPGDAGKKGDKGDPGVGLRGPPGLPGPPGPPGPGTKTDKLTFIDMEGSGYGPDL
ENFRGPSGLPGPPGPPGVPGLPGVPGTFGGNSTAIPGPPGLPGRPGQDGMAGPPGPPGLP
GKDGNPGTAGLAGERGTDGDIGLPGAPGSKGSTGEPGIPGTPGETGLAGLPGPIGPRGLP
GPPGPPGPSGRGTADGFDDMEGSGITFGGRAIQGRPGIPGEKGDAGFTGPKGDRGIPGLD
GRPGLDGFPGPEGQKGNRGDQGERGEPGRDGIGIPGPPGPPGQIIYRSSDGADIIGGIGE
GTRGYKGETGEQGYPGLPGLKGDKGEAGRILGPDGSLFTGGVKGDTGPRGPSGPMGPVGP
SGQKGEIGFPGRPGRPGVNGLKGEKGETADPTGYGIRGPAGPPGPPGPPGQAVYGDPRAA
GPQGYPGQKGERGIPGTKGDQGDVGPAGPPGTFPYDFSSFGRGEKGEKGEPSVGDGQGIQ
GPPGNPGYPGLPGAKGDSIQGPPGPRGPPGAAGVGYEGRQGPPGPPGPPGAPAQQVYPGP
GPNRPVLSVPGPPGPPGPPGPQGGSGGYSSATVLQTFQTMINLRQSLQEGTIVLVLETAD
LYVRVRDGFRKILLGEYVTGNGQGNEIAAKEPPVVIYPSGNRDSGSYQSTDEYEPPRNER
PPPVNPRPPQPPPQVFPKPEPEDNVPVHTHQEYQAALHLVALNAPLTGSMRSIRGVDFQC
FEQARKAGLHGTFRAFLSSRLQDLYSIVRKADRLSVPIVNLRDEPLFDNWEALFGSEGQM
NPGARIYSFEGRDVATDSTWPQKMIWHGSDAKGRRLTESYCETWRTDEGIVTGQASSVTN
GKLLEQRPQSCNKNFIVLCIENSFMPAGQK
NT seq
4773 nt
NT seq
+upstream
nt +downstream
nt
atggctcgggcacggctttgcccagtgctggctgtcctcctcctggtggtgaccttacct
gcactgtctcaggcacagttccttaattggctcggctggggtgcaaagccaacgattctt
gctacccctacggcgaagataaccacagactctgcaattttggctactactactactgca
gcaccgaattcctctgctacatcatctcccgaaggaagcagccttcctgcggcagtgaca
gttgtagacaacgagacgtcttctacagggcgggatgaaaaggacctcacacctgcaact
tctccatcttcacagcctgcagctacagcatctttatctgcaggtgtgtcttctccatct
aaccagacttccgtccccgcagctgctgcaacgacaaatccaaacgcattaaccacacac
aaacagcccgttggcactgggactacagaagcctctttgaaccgtcagctgcggattcca
gaatcccccgagaccgttaaaaagcctccagaaaatcagatattcagtatttttcaggtt
caggaagaggagctaagcagcggttctgatgctcagcctgcaacacctacatcaaagaat
gtacctacctccgcgcctgaagcctcaaccactcacaagagcgaagataaaaatattgct
ggcgtgggtgctgagatcttaaacgtggctgaaaatattcgaaatttcatgaatgtttgg
gaagagaaagcgaaggacttgatgacttctactgacaatccacctgctgaacaagggtta
ggggagttaatcaacatgacgcttcctacaaatcaaagtggcgacttaagtcagtatggc
acggggcaggccgacagtgccaacaccacagaaacacatgcacgtagtcaattggccctt
tccaataaccagaccttaaacgtcacgcaggtgccttcgggaaacgttacgtctgctcaa
ccagatcgggaaaatgtagaggttggcctcctgcagctcattggagatccaccgccagaa
gagatcactaaaatctttggccctgataggactcccggctatgtatttggagaagatgcc
aacactggacaggtggcacagtaccaccttcctagccccatgtttagggacttttctatt
ctcttccacatacagcctaccactaccaaggccggaatgctgttctccatcactgatgct
tcacagtctattgtgtacattggagtgaagctgtcagaagtcaaagatggtaagcaacag
atcatttttttctacaccgagcctggatcaacagtgaccttccctgccgccaccttcagc
gtcccagcactgacaaaccaatggacacgctttgccctcagtgtggaagaagaggaggtt
gccctgttcatggagtgtaatgaactgaagagggtccgttttgagaggtcacctgatgag
atggagctggaagatggatctgggcttttcgtggctcaggctggaggggctgatcccgac
cgctaccagggtgtgatagcagaaataaaaattaaaaacgaccccagagctgcagagctt
cagtgtgaagaggaaggagacgattctgatggggcatctggagactttggcagtggcctt
tcagaagaggaagtggttgaggtgactcgagctccgaaggtaatagcggtggctcctatg
acagtaccccccatacagagaccatctgtagtaaatgagcctaaggtcatcaaggaagtt
caagagactatacagagagtggaagtttcaggtaaacccggacagaaaggagagaaagga
gacctaggcgatcgtggtatgaagggtgaaataggaccatttgggcctaaaggagagatt
ggtgacagtacaagtgcgggcattggccctaaaggtgataagggccagaaaggagagctt
ggagtcaaaggtgatgctggatttggatataatggtcctaaaggacagaaaggagaccca
ggagcaagtggaccaccaggaccccctggagtctctgggccttctgttgtccagaaagct
gatggctcaactgtgcagcagattacaggaccacggggccccccaggtcctgaagggccc
ccaggaaaagaaggagagcctggtgatcctggtgaagatggcaaagctggtgaagttgga
cctcaaggatttccaggaaccccaggtgatgcaggaaagaaaggagataagggtgatcca
ggagttggacttagaggacctccaggtctacctggacccccaggcccacctggtccaggt
accaaaacggacaaattgacatttattgatatggagggttctggctatggcccagatctg
gaaaactttagaggaccatctggtttgcctggtccacctggccctcctggagtacctgga
ttaccaggggtaccaggaacctttggtggaaacagcactgcaatcccaggaccccctggt
ctgcccggtagacctggacaagacggaatggctggaccccctggcccaccgggtctccct
ggaaaagatggaaacccagggaccgctggccttgctggagaaaggggtactgatggtgat
atcggacttccaggagctcctgggtctaaaggaagtacgggagaacctggtattcctgga
actcctggagaaactggattagctggacttcctggaccaatcggaccccgtggattgcct
ggacctccaggtccacctggcccttctggacgtggaactgctgatggatttgatgacatg
gaaggttcgggtattacttttggtggccgagccatacagggaaggcctggaattcctggg
gaaaagggagatgcaggatttacaggaccaaagggggatcgaggaattcctggtttggat
ggaagacctggactggacggattccctggccctgagggtcaaaagggaaacagaggtgat
caaggagaacggggagagccaggccgtgatggaattggcattcctggaccacccggacct
cctgggcaaatcatttacagatcatctgatggcgcagatatcattggtggaattggagag
ggtactagaggctacaaaggcgagacaggggaacagggttacccaggactgcctggactg
aagggagataagggagaggcaggaaggatcctgggccctgatggttcgctatttactgga
ggagtaaagggtgatacgggaccaagaggccctagtggacctatgggaccagtgggtcct
tctggacagaaaggagaaattggattccctggaagacctggtcgtcctggtgtgaatgga
cttaagggagagaagggagaaactgctgatcctactggctatggaattagggggccagca
ggtcctcccggccctcctggtcctccagggcaagcagtgtatggtgatccacgtgctgct
gggcctcaaggatatccaggtcaaaaaggcgagagaggaattccaggaacaaaaggtgat
caaggagacgttggccctgctggaccaccaggaacattcccatatgatttcagcagcttt
ggaaggggggagaaaggagaaaagggagaacctagcgttggcgatggtcaaggaattcaa
ggacctcccggcaaccctggatatcctggactgccaggtgctaaaggagacagcattcaa
ggtcctcctgggccacgtggtccaccaggagctgctggtgtaggatatgaaggaagacaa
ggaccacctgggccaccaggacctccaggtgctcctgcacaacaggtataccctggacct
gggcccaatagaccagttctaagcgttccgggaccaccaggaccccctgggccacctgga
ccccaaggaggatcaggaggatattcttcggcaacggtattgcagacgtttcagacaatg
attaatctgcggcagtccttgcaggaagggaccattgtactagtgctggaaacagcagat
ctgtatgtacgagtcagagatggcttcagaaagattcttcttggagaatatgtaaccggc
aatggtcagggtaatgaaattgctgcgaaagaacctcctgtggtcatttatccttctggt
aacagagactcgggatcctatcagtctacagatgagtatgagcctcccaggaatgaaaga
ccaccaccagttaatccccgtcctccacagccaccacctcaagtgttccccaagccggag
ccagaagacaatgttcctgtacatacacaccaggagtaccaggcagcgttacacttggtg
gctctgaatgcacccctaactggcagcatgcgctccatacgtggcgtggacttccagtgc
tttgaacaagcccgcaaagctggacttcacgggacattccgagcgttcctttcttcgcgt
cttcaggatctgtacagtattgttcgcaaagctgacaggctgtctgtgccaatcgttaat
ctcagggatgaaccactgtttgacaactgggaggccctttttggctcagaaggacagatg
aatcctggagctcgcatttactcatttgaaggaagggatgttgcaacagattctacttgg
ccacagaagatgatctggcatggatccgacgccaagggtcggcgtctaacagagagctac
tgtgagacctggcgcacagatgaaggcatagtcaccggccaggcttcctctgtcacaaac
gggaaacttctagagcagcgtcctcagagctgcaataagaacttcattgtcttgtgcatt
gaaaacagcttcatgcccgctggccagaagtag
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integrated database retrieval system
