Rana temporaria (common frog): 120944104
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Entry
120944104 CDS
T07929
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120944104 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtem03041
]
120944104 (PRPF40A)
Spliceosome [BR:
rtem03041
]
Complex A
U1 snRNP components
U1 related factors
120944104 (PRPF40A)
Complex B
120944104 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
120944104
NCBI-ProteinID:
XP_040213881
LinkDB
All DBs
Position
6:186610150..186678328
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AA seq
938 aa
AA seq
DB search
MYPIRWMCPPLAALASGDGTNGPSQPGLFPNGSRMMRGQFMNPVAHFASMGMGGLPPRPN
LGPPGMIPPLMGPMGAHQMGQMAPMIPPLIPGMMMPTHVAPGTMPGSMQVPGVNSLDPTL
VQPPVTQAPHPVISAPPALSANPAASEEPTKPKSLWTEHKSPDGRTYYYNIETKQSTWEK
PDEMKTPAEQLLSKCPWKEFKSDSGKPYFYNSQTKESRWAKPKELEDLEAMIKEENSSSS
QETVASTPVPAAAPAPAPAPVPVPVPVQINTAPVAVELAITPTPAPVAVTAEAELVMSTP
TTPALDSETMVNDSGEEQAHSVSSSIQEKDPEVSSSGIVEESAKQEILADLASIDEEEER
ATKKTYTWNTKEEAKQAFKELLKEKHVPSNSSWEQAMKMIINDPRYSALTKLSEKKQAFN
AYKVQTEKEEKEEARLKYKEAKEGYQRFLENHEKMTSTTRYKKAEQMFNELDVWNAISER
DRLEIYEDVVFYLSKKEKEQAKQLRKRNWEALKNILDNMANVTYCTTWSEAQQYLMDNPT
FAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQVFLDELH
EHGHLHSMSSWMELYPTVSSDIRFANMLGQPGSTALDLFKFYVEGLKARYHDEKKIIKDI
LRDKGFVVELRTSFEDFVMVISSTKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARK
MKRKESAFKSMLKQAAPPIEADCVWEEVRERFNKEAAFEDITLEAERKRIFRDFVHAIEH
ECMHHHSKNKKHSKKSKKHHRKRSRSRSGSESEEEEENHTKKKTRQRSDSRSASEHSSSG
ESEKSYKKTKKHKKKSKKKRHKSNSPESEVERERDRKDRDKDDKERPRQKESKQQKSPKR
KSTREKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgtatcctatccgctggatgtgtcctccgctggccgctctcgcatctggcgatggtaca
aatggaccaagtcagccgggactttttccaaatggatctcgcatgatgagagggcaattt
atgaaccccgttgcccattttgcaagcatgggaatgggtggcttacccccaagaccaaat
ctggggccaccaggcatgatcccacctttgatgggaccgatgggtgctcatcaaatggga
cagatggctccaatgattcctcccctcattcctggaatgatgatgccaacacatgtggca
ccgggtacgatgcctggcagcatgcaggtgccaggtgtgaacagcttggatcctacactt
gttcagccgccagtcacgcaggctccacatcctgtaatttcggcgccaccagccctttca
gcaaaccctgccgctagcgaagagcccaccaagccaaaatctttgtggacagaacataaa
tcaccagatggtaggacatattattataatatcgaaaccaagcagtctacgtgggagaaa
ccagatgaaatgaaaaccccagccgagcaattattatccaaatgtccgtggaaggagttc
aaatctgactctggaaaaccatatttctacaattcccagacaaaggaatctcgttgggcc
aaacctaaagagctagaagatctggaagcaatgattaaagaagaaaacagcagcagttca
caagaaaccgtagcttccactcctgttcctgctgctgctccggctcctgcacctgctccc
gtacctgtacctgttcctgtacaaataaacacggctccggttgctgtagagcttgcaatc
acacccacacctgcacctgtggcagtaactgctgaagcagagcttgtcatgtccaccccc
acaacgcctgccctagactctgagactatggtcaatgactctggtgaagaacaagcccat
tctgtgtcatcttctattcaagagaaggaccctgaagtcagcagcagcggcattgtagag
gaatctgccaaacaagagatcctagcagacttggcttcaattgatgaggaggaagaaagg
gctacaaaaaagacgtatacatggaacacgaaggaagaagctaagcaagcatttaaggaa
ctcctcaaagaaaagcatgtgccgtctaattcttcttgggaacaagctatgaagatgatc
atcaatgatccaagatatagcgcactgacaaagctaagtgagaagaaacaggcatttaat
gcatacaaagtacagacagaaaaagaagagaaggaggaagccaggttgaaatacaaagag
gctaaagaaggttaccagaggtttctagaaaaccatgagaagatgacctcaaccacccga
tacaaaaaagcggagcagatgttcaatgagctagatgtctggaatgcaatatctgaacgc
gaccgtcttgaaatttatgaagatgttgtgttctatctttcaaagaaagaaaaggaacaa
gccaagcagctcagaaagaggaactgggaagctttgaagaatatcttggataatatggca
aatgtaacctattgtacaacatggtcagaagcacagcagtacctcatggacaaccctact
tttgctgaagatgaagaactgcagaatatggataaagaagatgccttaatatgttttgaa
gagcatattagggctttggaaaaggaagaggaggaagagaaacaaaaaacattgctaagg
gaaagacgtcggcagaggaagaatcgagaatctttccaggtgtttttagatgaattacat
gaacatggtcacttgcactctatgtcctcttggatggagttgtaccccacagtcagttct
gacatcagatttgccaacatgcttggtcagccaggttccacagcattagacctattcaaa
ttctatgtggaaggtctaaaggctcgttaccatgatgagaaaaagatcatcaaagatatt
ttaagggataaaggttttgtagttgagcttcgcacaagctttgaagattttgtaatggtt
attagctcaacaaaaagagccaccacgttagatgctggaaatatcaaacttgctttcaac
agtcttttagagaaagcagaggcccgggagagagaacgtgagaaggaagaagcccggaaa
atgaaaagaaaggaatctgctttcaagagtatgttaaaacaagcagcaccgcccattgaa
gcggactgtgtgtgggaagaggttcgggaaaggttcaataaggaggcggcatttgaagat
atcacacttgaagcagaacggaaaaggatatttagagattttgttcatgccatagagcat
gaatgtatgcatcatcattcgaaaaacaagaagcactcaaagaaatcaaagaaacatcat
cggaagaggtctcgctcgcgctctggctcggaatccgaggaggaagaggagaaccacaca
aaaaagaagacaaggcaaaggtcagactccaggtctgcctctgaacattcctccagtgga
gaatcagaaaaaagttataagaagacaaagaagcacaaaaagaagagcaagaagaaaagg
cataaatctaattctccagaatctgaagtagagagggaaagagatagaaaagacagagac
aaggatgacaaggaacgaccgaggcagaaagaatcaaaacagcagaaatctcctaaaagg
aaatcgacaagggagaaggattctggcaattgggacacatctggaagtgaattaagtgaa
ggggaattggaaaagagaagacggaccctcctggagcaattggatgatgatcaataa
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