Rana temporaria (common frog): 120944246
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Entry
120944246 CDS
T07929
Symbol
ERCC3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03022
Basal transcription factors
rtem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120944246 (ERCC3)
09124 Replication and repair
03420 Nucleotide excision repair
120944246 (ERCC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtem03021
]
120944246 (ERCC3)
03400 DNA repair and recombination proteins [BR:
rtem03400
]
120944246 (ERCC3)
Enzymes [BR:
rtem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
120944246 (ERCC3)
Transcription machinery [BR:
rtem03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120944246 (ERCC3)
DNA repair and recombination proteins [BR:
rtem03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120944246 (ERCC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
120944246
NCBI-ProteinID:
XP_040214157
LinkDB
All DBs
Position
6:212162631..212220021
Genome browser
AA seq
779 aa
AA seq
DB search
MGKKDKSDKKKFRKRHYDEEDDDDEELPGNDQEAVPSAAGKQVDETSQKVDEYGAKDYRS
QMSLKTDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAISEPVCRPQHVHEYKLTAYSL
YAAVSVGLQTSDIIEYLQKLSKTGVPEGIVQFIKLCTVSYGKVKLVLKHNRYFVESAHPE
VIQDLLQDPIIRSCRLRNEEGEDTELITETFTSKSAISKASDPASGPSTSQGPETQSKGD
VPADLFEFYEQMDKEEEEEEETQTVSFEVKQEHIELLQKQCIHMEYPLLAEYDFRNDTMN
PDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLI
LGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSIAISTYSMLGHTTKRSWEA
ERVMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHTKLGLTATLVREDDKIVDLNFL
IGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILFYTMNPNKFRA
CQFLIKFHERRNDKIMVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKIN
TIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLV
SQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEDELAFATKEDQQQLLLKVLAASDLD
AEEEIVAGEFGSKSHMGRRVGTMSSMSGADDAAYMEYHTPRNKNAAGKHVHPLFKRFRK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaaggacaagtctgacaagaagaaattcaggaagcgtcactatgacgaggag
gacgatgatgacgaggaactccccggcaatgaccaggaggccgtgccgtccgccgccggg
aagcaggtggatgaaacctcccaaaaagtggacgagtacggagctaaagattaccgatcg
cagatgtcgctgaagaccgatcactcctcccgtccgctgtgggtggcaccagacgggcac
atcttcctggaagccttctccccggtctataaatacgcccaggacttcctggtggccatc
tccgagccggtctgcagacctcagcatgttcacgagtataaacttactgcgtattcgctg
tacgccgcggtcagcgtgggcctgcagaccagcgacatcatagagtatttacagaagctc
agcaagaccggagtcccggagggaatcgtacagttcatcaagctctgtactgtcagctac
gggaaggtgaagttggttctgaaacacaacaggtactttgtagagagcgcccacccagag
gtcatccaggacctcctacaggatcccatcataagaagctgccgactgcgcaatgaggag
ggcgaggacaccgaactgatcaccgagacctttaccagcaagtcagctatctccaaggcc
agtgaccccgccagcggaccctccacctcccagggtcccgagacgcagagcaaaggcgac
gtccctgccgacttgttcgagttttacgagcaaatggacaaggaggaagaggaggaggag
gaaacgcagacggtctcctttgaggtcaaacaggaacacattgagttgctccagaaacaa
tgtatccacatggagtatcctttattggctgaatacgatttcagaaacgacaccatgaat
cccgacatcaacatcgacctgaaacccactgccgtcctgcgcccgtaccaggagaaaagt
ttgcgcaagatgtttggcaacgggcgcgctcgttctggcgtgatcgtcctgccttgcggt
gcgggaaagtctctggttggcgtcacggccgcctgtacagttcggaagaggtgcctcatt
ttggggaactcggccgtctccgtggagcagtggaaagctcagttcaagatgtggtccacc
atcgacgacagccagatatgccgttttacctccgacgccaaggacaagcccatcggctgc
tcgattgccatcagcacctactccatgctgggacacaccaccaagaggtcttgggaagct
gagagggtgatggagtggctgaaaagtcaggagtggggtctgatgattctagacgaggtg
cacaccattccagctaagatgttccgtcgtgtcctaaccatcgtccaggcgcacaccaag
ctcggtctcaccgccacgctggtccgagaagatgacaaaatcgtcgacttgaatttccta
attggtcccaagttatacgaggccaactggatggagctccagaacaacggctacatcgct
aaagtgcagtgcgctgaggtctggtgccctatgtcacccgagttctaccgagaatacgtc
gccatcaagacaaagaagcgcattcttttctacactatgaacccgaataaatttcgagct
tgccagttcctgattaagttccacgagagaaggaatgacaaaataatggtgtttgccgac
aatgtctttgcgctgaaggagtacgccatccggctgaacaagccttatatctacggtcca
acctctcaaggggagagaatgcagatcctacagaacttcaaacacaatcctaaaatcaat
acgatctttatttctaaggtgggagacacctccttcgatcttccagaagccaacgttcta
atacagatctcctctcacggagggtcccgaagacaagaggcgcagcgcctggggcgtgta
ttgagagcgaagaaagggatggtggcggaggagtacaacgccttcttctattcattggtg
tcacaggacacccaggaaatggcgtactccaccaagagacagagattccttgtggatcaa
ggctacagctttaaggtgatcaccaagctggccggcatggaggaagatgaactggcattc
gccaccaaagaagaccagcagcagctcctgctgaaggtgttggctgcctctgatctggac
gcagaggaggaaatagtggccggggaattcggatcaaaatctcacatgggacggcgtgtc
gggacgatgagctccatgtctggagcagacgatgcggcgtatatggaataccacacacct
cgaaacaagaatgccgccggcaaacacgtacatcctctgttcaagcgcttccgaaaatga
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