Rana temporaria (common frog): 120945316
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Entry
120945316 CDS
T07929
Symbol
ABCA1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem02010
ABC transporters
rtem04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120945316 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120945316 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rtem02000
]
120945316 (ABCA1)
Transporters [BR:
rtem02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120945316 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
120945316
NCBI-ProteinID:
XP_040215353
LinkDB
All DBs
Position
1:317423427..317572859
Genome browser
AA seq
2314 aa
AA seq
DB search
MTYCTQLGLLLWKNFTYRRRQTLQLLVEVAWPLFIFFILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWMQGIICNANNPCFRYPTPGESPGVVGNFNRSIVSRLFSDARKLLLYSRKDT
SGKDLHKFLTNLHRFRGTGLKLRDCLMDNGKFTTFLQQNISMPPIVVEEIMDADLKLEQV
LVSGFQIRLKDLCNSSRLAEYVTIHNEEVAKFSQTVICALPEDKLNLLEHEFRSNIDLLK
PITKEMSSNSFPVLREVTDNMLHSLGQLAKEVITMKSWAEMRQEVMFLTSGNSTSSPTSL
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGATEGGENGTEEDSGSAYDNSTTPYC
NDLMMTLESSPLYRMIWRALKPLLVGKILYTPNTPATRLLMSEVNKTFQELSVFQDLGAM
WEEVRPLIKTFIESSKEMDLIRTLLTNKGSKQFLDRQLNSTGWTSADISRFLAKDVFEAR
DGSGTFYTWREALNETDRVVLTMSRFMECVNLDKLEPVDTEEKLIDKSAELLNERKFWAG
VVFVDLPENDTVLPQHIKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYIWGGFAY
LQDVIEQAIIRIQTGTEKRTGVYVQQMPYPCYVDDIFLRVMSRSLPLFMTLAWIYSVAVI
IKGIVYEKEARLKETMRIMGLDNGILWLSWFISSFIPLLMSAALLVLILKTGNLLPYSDP
SVVFVFLSIFGVVTISQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSL
KIFASFLSPVAFGFGCEVFALFEEQGVGVQWSNLLDSPLQEDGYSLTTSGFMMLFDTLLY
GVMTWYFEAVFPGQYGIPRAWYFPFTKSYWCGEEPNENFHHPSLQKGPSEVCMEEEPAHL
QLGVSIQNLVKIYRDGKKVAVDGLSLSFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYIMGKDIRTELNSIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEEKVKTEMEQM
VIDVGLPNKKKCKTNQLSGGMQRKLSVALAFVGGSNVVILDEPTAGVDPYSRRGIWDLLL
KYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKRDTD
SSLSSCRNSSSTMSYLKKDSSISAPASKQSQSPMLAAPSEVGPTGTVITKHNKHGQRKRE
AKSGEDSVSQSSSDAGLGSDHESDTLTIGLTDVSVISNLINKHVPDARLVEDIGHELTYV
LPYEAAKEGAFVELFHEIDDRLFDLGISSYGVSDTTLEEIFLKVAEDTGVDAETSDGLLP
ARRKRYAFGDHQSCLKPFTEDDNFDTNDSDLDPESRETDYLSGVDGKGSYRMKSWSLMRQ
QFTALLWKRLLYAKRSRKGFFAQIVLPAVFVLIALMFSLIVPPFGKYPSLEIEPWMYDEQ
YTFFSNDAPGDPGTETLLKALLEKPGFGTACMDGYSVKGVPCSGEDREWRTQFVSQSVED
LFMYGNWTMENPSPACECSNENVKKMLPVCPPGAGGMPPFQKVQNTSDTLQNLTGRNISD
YLVKTYAQIIGKSLKNKILVNEFRYGGFSLGASSSPPLPPSEEVVASIRHIKRRLDLAQN
GAANRFLDSFGVFMKGLDAKDNVKVWFNNKGWHAITSFLNVMNNAILRSKLPEGENPAKY
GITAFNHPLNLTKEQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHM
QCISGVKPVIYWLANFVWDMCNYIVPATLVVIIFVCFQQDSYVSSSNLPVLALLLLLYGW
SITPLMYPASFLFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNINDILKSVL
LVFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPMSWDLVGKNLFAMAVEGLVFFIIT
LLIQYRFFIKPRPVTAKLPPIIDEDEDVARERQRILNEGGRSDILEIKGLTKIYRTKRKP
AVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTDVTAGEAFLKGHSILSNMQEVHQN
MGYCPQFDAINELLTGREHLELYALLRGVPEKEVCKVAEWAVRKLGLVKYSEKCAGGYSG
GNRRKLSTAIALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIIKEGRSVVLTSHSMEEC
EALCTRMAIMVNGKFRCLGSVQHLKNKFGDGYTIVVRIGGSNPDLKPVEDFFSHAFPGSM
LKEKHRGMLQYQLRSSHSSLARIFSILSKNKKKLHIEDYSVSQTTLDQVFVNFAKDQSDD
DHLKDLSLHKNQTVVDMAVLTSFLQDEKVKESCV
NT seq
6945 nt
NT seq
+upstream
nt +downstream
nt
atgacttactgtacgcaactaggactccttctctggaaaaactttacctaccgacggagg
cagaccctgcagctgcttgttgaggtagcttggcctctcttcatcttcttcattctgatc
tctgtgcgactttcctatccaccctatgaacaacatgaatgtcattttccaaacaaggca
atgccatctgctgggacattgccgtggatgcaagggattatctgcaatgccaataaccca
tgtttccggtatccgacaccaggggaatcaccgggagtggttggaaacttcaataggtca
atagtttctcgcttgttctcggatgcacggaaattgctgctatacagtcgcaaagacacc
agtgggaaggacttgcacaaattcttgacaaatttacataggtttcggggcacaggcttg
aagcttagggactgcttgatggataatgggaaattcactaccttccttcagcaaaacata
agcatgcctcccattgtagtggaagaaataatggatgcagatctgaaactggaacaggtt
ttggtgtctgggtttcaaatacgattgaaggatctatgcaatagctctaggctggcagaa
tatgtcaccattcacaatgaagaagttgcaaaatttagccagacggtaatctgtgctctt
ccagaggacaagctcaatctgctggagcatgagttccgttccaacattgatcttttgaag
cccataacgaaagaaatgtcttcaaactctttccctgtcctgagagaggttacagataac
atgctgcacagcctgggtcagctcgccaaagaagttataactatgaagagctgggcagaa
atgaggcaggaagtcatgttccttactagtgggaactccacatcttcaccaacctcatta
tatcaagcggtatcacgtattgtgtgtggccatcctgagggaggtggattgaagatcaag
tccctcaactggtatgaagacaataactacaaggcactctttggagccactgaaggtgga
gaaaatggcacagaggaagactctggttctgcctatgacaattctacaacaccttattgt
aatgatctgatgatgacactggagtccagcccactttacagaatgatctggagagcacta
aaacccctacttgtcggcaaaatcctatatacgccaaacactccagccacgcgcctgtta
atgtcagaggtcaacaaaactttccaagagttgagcgtgtttcaggatcttggagcaatg
tgggaagaagttcggccactgattaaaacatttatagaaagcagcaaggaaatggatctt
attaggactctgttgaccaataaagggagcaaacagttcctagatcgccaacttaattct
acaggctggacatcagcagacatctcaaggtttttagccaaagacgtatttgaagcacgg
gatgggagtggaaccttttacacttggagagaagctcttaatgagacagaccgtgttgta
ttgaccatgtcacgattcatggagtgtgtcaacctggacaagttagaaccagtggataca
gaggaaaagcttattgataaatccgcggaacttctaaatgagagaaagttctgggcaggt
gtagtctttgtggaccttccagaaaatgacacagtgttgcctcaacacataaagtataaa
atacgcatggatatagacaatgtggaaagaaccaataaaattaaggatggctattgggat
ccaggccctcgtgctgatccatttgaagacatgcgttacatctggggagggtttgcatac
ctgcaggatgttattgaacaagccatcatcagaatacagactggaacagagaagaggaca
ggagtctatgtccagcaaatgccctacccatgctatgtggatgacatatttcttcgtgtt
atgagtcgatcactgcccttgtttatgaccttagcctggatctattctgtagctgtaatc
atcaagggtatagtttatgagaaagaagctcgtctgaaagaaaccatgagaattatgggt
cttgacaatggaattctatggctgagctggtttattagtagttttattcctcttctaatg
agtgctgctttgttggtcctaatcttgaagacgggaaaccttctaccgtatagtgatcca
agtgtggtctttgtcttcttgtctattttcggagtggtgaccatctcacaatgctttctg
atcagcacccttttctcaagagccaacttggcagcagcttgtggtggcatcatctacttt
accctttacttgccttatgttctgtgtgtagcttggcaggactacgttggattctctctc
aagatttttgctagctttttgtcacctgtggcttttggatttggctgtgaagtttttgcc
ctctttgaggagcaaggtgttggcgtacagtggtccaatcttttggacagtcctctccag
gaagatgggtacagtctcacaacctctggcttcatgatgctttttgacacacttttgtat
ggagtgatgacttggtattttgaagctgtttttccaggccagtatggaatacctagagct
tggtacttccccttcacaaagtcatattggtgtggagaagaaccgaatgagaactttcac
cacccgtccttacaaaaaggaccatctgaagtctgcatggaagaagaacctgctcacctt
cagctaggagtctccatccagaacctggtgaagatttatcgtgatggaaaaaaagtggca
gtggatggcctgtcattgagcttctatgaagggcagatcacttcctttttaggacacaat
ggagctggaaaaacgacaacaatgtctatattgactgggctattcccaccaacctctggc
acagcttacataatgggaaaagacattcgaacagagctcaattctatcagacaaaacttg
ggagtttgtcctcaacataatgtactctttgatatgcttactgttgaagaacacatctgg
ttttatgcacgactgaaaggactctcagaagagaaggtaaaaacagaaatggaacagatg
gtaattgacgttggccttcccaataagaaaaaatgcaagacaaatcagctgtcaggtggt
atgcaaaggaagctgtcagtagccttagcctttgtgggtggatcaaatgttgtcatcctt
gatgagcccacagctggagttgacccatattcccgcagaggtatctgggacctgcttctt
aaatatagacaaggacggacaatcatcctatccacacatcacatggatgaggctgacatt
ctgggtgatcggatcgctataatatcccatggaaaactgtgctgtgttggctcatctctc
tttctaaagaaccaactggggactggctactacctaacattagtgaagagagacaccgac
tcttcacttagttcctgcaggaacagcagcagtacaatgtcttatctgaaaaaggacagc
agcatttcagctcctgcttccaaacagagtcagagcccgatgctggcagcaccctcagaa
gtggggcctacaggaacggtgattactaaacataacaaacatgggcaacggaagagagaa
gccaagagtggggaggatagcgtctctcagagtagctcggatgcaggcctcggtagtgac
catgaaagtgacactcttacaataggtctgacagacgtctctgtgatttcaaacctcatc
aacaaacatgtgcctgacgcacggcttgtggaggacatcggacacgagctgacttacgtc
ctaccttacgaagctgccaaggaaggggcctttgtggaactttttcatgaaatagatgat
cgtctctttgaccttggaatttccagttacggagtctcagacaccaccctagaagagatc
ttcctgaaagtggctgaggatactggtgtggatgcggaaacatcagatggcttactccct
gctagaagaaagagatatgcatttggagaccatcaaagctgcctgaaaccgtttactgag
gatgacaactttgataccaatgactctgacttggaccctgagtcccgagagacagattat
ctgagtggcgttgatggcaaaggctcttaccgcatgaaaagctggagtttgatgaggcag
cagttcaccgccttactttggaagaggttgctgtatgccaaacgcagcaggaaaggcttt
tttgcccagattgtgcttccagctgtgtttgtactcattgcactgatgtttagccttata
gtgcccccgtttggtaaataccccagccttgagattgagccttggatgtatgacgaacag
tataccttcttcagtaatgatgccccgggggaccctggtactgagactctcttgaaagct
ttgcttgaaaaacctggatttggaactgcatgcatggatggctattctgttaagggtgtc
ccttgctctggtgaagatagagaatggagaactcagtttgtctctcagtctgtagaggat
ctatttatgtatgggaattggacaatggaaaacccttcaccagcctgtgaatgcagcaat
gagaatgtaaagaagatgcttccagtgtgtccacctggggctggtgggatgccacccttt
cagaaagtacaaaacacatcagacaccttgcagaatctcacaggcaggaacatatctgat
tatcttgtgaaaacatatgcgcaaatcattgggaaaagcttaaagaacaagatcttggtc
aatgagttcaggtatggaggtttctccttgggggcaagcagttccccaccacttccacca
agtgaggaggtcgttgcttccattagacacatcaaaagacgcctggacctagcacagaat
ggggctgccaatcgtttccttgatagctttggggtcttcatgaaaggactagatgcaaag
gataatgtaaaggtatggtttaacaacaaaggctggcatgctattacttcatttcttaac
gtgatgaataatgccatcctgcgctccaagctacctgaaggagaaaatcctgccaaatat
gggatcacggcttttaatcacccactaaatctcactaaagagcaactttctgaggttgca
ctgatgaccacatctgtagacgtcttggtttccatctgtgttatatttgccatgtccttt
gtgccagccagttttgtggttttcctgatccaagagagagtgagcaaggccaaacacatg
cagtgcatcagtggagtaaaaccagttatctactggttagccaactttgtgtgggatatg
tgtaactacatagtgccagctacactggtcgttataatatttgtctgcttccaacaagac
tcctacgtatcttcttccaatttacctgtcttggcccttttgcttctgctttatggatgg
tccataaccccactgatgtacccagcttcctttttgttcaagatccccagtacagcttat
gtagtgttgactagtgttaatctattcattgggatcaatggcagcgtggccacttttgtg
ctggaactttttaccaataataaactaaacaacatcaatgatatattaaagtcagtgctg
ttggttttcccccacttctgcttgggaagaggacttattgatatggtgaagaatcaagcc
atggcagatgctctagaaagatttggtgaaaaccgttttgtctcccccatgtcctgggac
ctggttggaaagaatctctttgccatggctgtggagggattggttttcttcattataacc
ctgcttatccaatatcgtttcttcattaaaccaagacccgtgactgcaaagcttccgcca
ataattgatgaggatgaagacgtggcaagggaaaggcagaggatattaaatgaggggggc
cggagcgatatactggaaatcaaaggactgacaaagatctatagaacaaagcgaaagcca
gctgttgacagactgtgcgtgggaatccctcctggagagtgctttggactgctaggagtt
aatggtgctggtaaaaccactactttcaagatgcttactggagataccgatgtgactgct
ggcgaagctttcctgaagggtcacagcatcctgtctaacatgcaggaagtccatcagaac
atggggtactgtcctcagtttgatgctattaatgagctgttgacagggagagaacacctg
gagctttatgctttactgcgtggtgtacccgaaaaggaggtttgcaaggttgccgaatgg
gcagtacggaagctcggactagtgaaatactctgagaaatgtgcagggggctacagtggt
gggaacaggcggaaattatccactgctattgctttgatcggaggaccaccagtggtgttt
ctagatgaaccaactacaggcatggatcctaaggcaaggcgcttcttatggaactgtgcc
ctaagtatcataaaagaaggaagatcagttgtactcacatctcacagtatggaagaatgt
gaagctctctgtacaagaatggctatcatggttaatggaaagttcaggtgtctgggaagt
gtacagcatctcaagaacaagtttggagatgggtacacaattgtagtacggataggaggt
tcaaatccagacctaaaacctgtggaggatttcttcagccatgccttcccagggagcatg
ttaaaggaaaaacatagaggaatgctgcagtaccaactgcggtcctcacactcttccttg
gctaggatcttcagcatcttatccaagaacaagaaaaaacttcacattgaagattattca
gtctctcagaccactcttgaccaagtgtttgttaattttgccaaggaccaaagtgatgat
gatcatttgaaggacttgtcattgcacaaaaaccagactgttgtagatatggctgtcctg
acatcatttctccaggatgagaaggttaaagaaagctgtgtgtga
DBGET
integrated database retrieval system
