Rana temporaria (common frog): 120946085
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Entry
120946085 CDS
T07929
Name
(RefSeq) FRAS1-related extracellular matrix protein 1-like
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120946085
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
rtem04091
]
120946085
Lectins [BR:
rtem04091
]
C-Type lectins
Lecticans
120946085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Big_9
Calx-beta
Lectin_C
UL45
Motif
Other DBs
NCBI-GeneID:
120946085
NCBI-ProteinID:
XP_040216752
LinkDB
All DBs
Position
7:201124591..201333516
Genome browser
AA seq
2102 aa
AA seq
DB search
MSRGAFLFFMWAWDVLAASVLIVTNKGATVGRGQTVYITENELRFNIPSDRDSCKVQVVS
NEPTTQRVGVLSPQGFDCHFLPDEVRYTHNGSPMLDVDQVMLRVYRFSERETLVESFILE
VKITEPLAGIVLLGENSLEVPEFYGVSSKSVDKNILSFKNRLERPGTNCVARTLGSELGL
PAHGRMVIEDSKRDSRLVAGSLPNPRVRNYRQEKLRCSGNKACQPGLKEMRLLKANCADL
LEMGIRYEHLSPPSPDVDYIPLQVEYRSQDNRKQLQAQNIWIPVNISGAVPNTPPQAAFM
PMFILEIDQFILTPLTTATLDAEDDETPKNKLVFKISKPPPEGYLTHVDDQTKAITSFTW
QDLHDLKIAYQPPNTSHPDRRNYEVEFQAIDSYFLSSTPIMVHFSIRTAETNAPRVSWNM
GLNLLEGQSRPITWDLFQIVDNDNIQAVRLVTVDGLHRGRLTLRDSKAFVFTVQDIKDGV
VRYHHDDSDTTKDFIVFRIFDGKHSIRHKFPINILPKDDSPPFLVNNVGFELLEGSSILI
EKDMLLATDMDSSDDHILYNITRPPKAGELVKRYSSESPGVPVPTFLQRDLFRGLIYYRH
FGDEIFQDSFEFVLSDSHQPPNYSDKHVVVILITSVKDQLPKEVSGSTRHLIVKENEVTR
IGRNQLHFTDTESPHSQLLYTVTKPCRSLMSQRIQDAGKLILVDTANTLEKDPLIPILNV
FTQEAVTHLKVAYMPPIQDIGPEPMYVQFEFSVSDEDGGKLTGLLFNITVMPVDDQTPKI
FTSPVRTEEGASSLITGENIDLSDVDTKEENLRIILKSRPLHGNLELRGVILPEGGSFNL
EDLRALKVRYQHDDSESYEDVIVFTVTDGNNEADGVLGIQIIPVNDEPPELQPGLKSSLD
CPEGGHVYITAENLYATDPDSDDAKLTYMIARTPLYGMIQRQGVVVEKFTQLDVIQRLIT
YIHTGGEIGPHPQADTVTLIVSDGESTTADTCCLNGPLPPPIPLHASLPVYDLNITLTPV
NNQQPIMHIGDIFVVDEGSSAVVTPAHLNASDADTLADNLIFFMETQPQFGYLKNTLPMP
GSEKSASEIKISSFSLQQVTSGSIQYVQSHHRGIEPTGDFFMISVSDSLHKSMSVPLYIV
IQPTNDEQPQLHVKNLTIIEGGSCEIGPATLNAEDLDAPPDTLRFSVIIPPAHGSLLNGA
DAKDISPDRYGSFGERGKGSAIDNFTLDELKQGMVFVYTHDDTDTAQDGFTVQLTDGRHS
VQHTLYVHILPINDEKPGLIRNGGLEVEAADNKVISSVALEAEDGDSRKQSIYYIINNAP
TYGELKMKAGPLWVTLYAGMNFTQEDVDLNHIWYFHTTILGCKGHDSFRFYLSDGEHNSP
PDTFYISILNLGKGDIVLLTRPVTLTEGDRVTLTTAVLLATDGTGKPERLLYAVSVPPVH
GQIEYINYPGLPISSFSQLDVAAQKVCYVHDNSREAGTDSFSFTVSNGLKARDGSLEFLT
KRTDRVPPTLLNNKGLQITEGGTMVISSNHLQLTDPDSPLEKLHYKIMVYPQYGQLYLGD
RVLQDNQFTQVDVNNLFLSYRHYGGLAKPDRFSFVASDDVNKGFLVDGQLKEDLAAFVIQ
VEHVDKIPPKILKKERPSTVENLKDGKSVIQITSRNLKASDPDSADGELLYVILRSPSFG
HLENAKTGDHVGRTFTQKDVNQRLIRYVINPSLDVNSDSFEFQVSDPAGNKSPPELLEAQ
WSILQLAEPYYRVCENSGTLAITLMRTGSSKDPAFIGIKVQELSARHGLDFTHSSASLVQ
FDPGVSMKSWNLYLKNDGLEENHELLKIFLRTPKNGVLGKNQEATVEIVDPRDGQCGGLN
TNVRGRGKNAEISTQITQIRLPNTRASVQAAPRIYHSMSGIDRPGQELAFAGSSVLYHGM
PPLSGAQQSRRRGEVWLVGAPPSLSAPERPQHDSAPPDSIRQSSNGTQQEEKLRRCPAGW
TRHQKYCYYLNSRKKSTWEEAEQDCAQMPGSHLTSVQSQSAMRWLWKFASKKPFWIGLKS
LERHSPWSWANGQHWTSSNTSSHHLRFCPEPRRKAASSSGGGKNGRRKAAGRGTDTSAPL
PL
NT seq
6309 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaggggcgttcctcttcttcatgtgggcctgggacgtgttggccgcctcggtc
ctcatcgtgaccaacaaaggagcgaccgttggaagaggccaaaccgtttacatcaccgaa
aatgaattacgcttcaacatcccgagcgacagagactcctgcaaggtccaagtggtctcc
aacgagcccaccacccaacgagttggagttttgtctcctcagggatttgattgtcacttc
ctaccagatgaagtgcggtacacacacaatgggtcccccatgctggatgtcgatcaggtg
atgctcagggtgtacaggttttctgaacgggagacattggtggaaagttttattttagaa
gtaaaaattacagagccgttggccggcattgttcttctcggagagaattctctagaagtt
ccagagttttatggcgtttcttctaaatcggtggacaaaaacatcctgtccttcaagaat
cgtttggaaagaccggggaccaactgcgtggccaggacccttggatctgagctgggtctt
cctgcccatggacggatggtgatagaggattcaaagcgtgacagcagacttgtggctgga
tctcttccgaacccgcgagtcaggaactacaggcaagaaaaattgcgatgttctggcaac
aaggcctgccaaccgggactaaaggaaatgaggttactgaaggccaactgtgccgatctt
cttgagatgggtatcagatatgaacacctcagtcctccctcccccgatgtcgattacata
ccgctccaggttgagtatcgcagccaagacaaccgaaaacagttgcaggctcagaacatc
tggattcctgtaaacatctcaggcgcagttcccaacactccaccccaggcggccttcatg
cccatgtttatcctggaaatcgaccagttcatcttgacccctcttaccacggccactctc
gacgccgaagatgatgagactccaaagaataaacttgtatttaagatcagtaagccaccg
cccgagggatatctcacccatgtagatgaccagaccaaagccattacctccttcacctgg
caagacttgcatgacctgaagatagcgtaccagccacccaacacctcccatcccgacaga
cgcaactacgaggttgaatttcaagcaatcgatagctatttcctgagcagcacccccata
atggtccatttctccattagaactgcagagacaaacgcccccagagtgtcctggaatatg
ggtttgaacttgctggagggacagtctcgcccgatcacctgggatctcttccagatcgtg
gataacgataacattcaagctgtccgcctggtcacagtggacgggttgcatcgcggacgt
ctcacgctgagagactccaaggctttcgttttcactgtccaggacatcaaagatggcgtc
gtacgttatcaccacgatgacagcgacaccaccaaagacttcattgtcttccgaattttc
gatggcaagcacagcatccgacacaaattccccatcaacattctccccaaggacgacagc
ccccccttcctggtcaacaatgtgggcttcgagctcctggaaggttcctccatcctcatc
gagaaagacatgttactggcaaccgatatggattccagcgatgaccacatcctctacaat
atcaccaggccaccgaaagctggagaattggtgaagagatattcctccgagagtcccggt
gttccggtaccgacgttcctgcagagggatctcttccgcggcctcatctattacagacac
tttggtgacgagatcttccaggactccttcgagtttgtgttgtcagacagccaccaacct
cccaactactctgacaagcatgttgtggtaatccttataacttctgtgaaggatcagctt
cccaaagaagtatctggaagtacaagacatcttatcgtgaaagagaacgaggtgaccagg
atcggccgtaatcaacttcactttaccgacaccgagtcaccgcatagtcagctcttgtac
accgtcaccaaaccgtgtcgctctctgatgtcccagaggatccaggatgccgggaaactt
atccttgtagatacagcaaacactttagaaaaagatccattaatccctatcctgaatgtt
ttcacccaggaagcggtaacccacctgaaagtggcgtacatgccgccgatccaggacatc
ggacccgagcccatgtatgttcagtttgagttctcggtaagcgatgaggacggaggaaag
ctgaccggactcctcttcaatataacggtcatgccggtggatgatcagacccccaagatt
tttaccagccctgtgagaactgaggaaggtgccagctctctgattactggagaaaatatt
gatctttctgatgtggatacaaaagaggagaatctgagaattattttgaagtcgcgtcct
ctgcatggaaacctggaactccgcggagtcatcctgcctgagggaggctcgtttaacctt
gaagaccttcgagccttgaaagtcaggtatcagcacgatgactcagaatcatacgaagac
gtgattgttttcaccgtgacagatggaaataatgaagcggatggagtgctcggtattcag
attataccggtaaatgatgaacccccagagttacaacccggcttgaaatctagtctggat
tgcccggaaggcggtcacgtctacataacggctgaaaacctctatgcaaccgacccagac
agcgatgacgcgaagctcacgtacatgatcgcccgcacgcctctgtacgggatgatacag
agacaaggggtcgtggtggagaagttcacacagcttgatgtgattcagagattaattaca
tacattcacacaggaggcgagattggaccccatccccaggcagatacagttacgctcata
gtctcagatggagaatccactacagccgacacctgttgcttgaatggccctcttcccccg
ccgatccctcttcacgccagcctccccgtctacgatctgaacatcactctaacgcctgtc
aataatcagcaacctatcatgcacattggtgatatatttgtggtggacgaaggatcttca
gctgtcgtcaccccggcccacctgaatgcgtccgacgcggacaccctggctgacaattta
atattcttcatggagacgcagccacaattcggatatctgaagaacacgctgcccatgcct
ggctcagaaaagtcggcctctgagataaaaataagttccttcagcttacagcaagtcacc
tccgggtctatccagtacgtccagtctcatcaccgcggcatagaacccacaggggacttc
ttcatgatctcggttagcgattcccttcacaagtctatgagcgttcctctctacatcgtc
atccaacccactaatgatgagcaacctcagctgcatgtcaagaaccttacgataattgaa
gggggaagctgcgagatcgggccggccacattgaacgcagaagacctggacgccccaccg
gacacgctgcgattctcggttataatcccccccgcgcacggctccttattaaacggcgca
gatgctaaggatatcagtccggacagatatgggagtttcggagaacgggggaagggctcc
gccattgacaacttcaccttggatgaactgaagcaaggaatggtcttcgtatacacacac
gatgacacagacactgcacaggacggcttcaccgtacagctgacagacggcagacactcc
gtacaacacacactgtatgtgcacatcctgccaatcaacgatgagaagcccggcctgatc
agaaatggcggattagaggttgaggcggcagataataaagtcatttccagcgttgctctg
gaggctgaagatggagattccagaaagcaatccatttattacatcatcaacaacgccccg
acctacggagagctgaagatgaaggccggccccctctgggtcaccttgtatgccggaatg
aattttacgcaagaagacgttgacctgaatcatatctggtattttcacaccacaatcctc
ggctgcaaaggacacgacagtttccggttttacctctccgatggagaacacaactcacct
cccgacaccttctacatctccattctaaacctgggcaaaggtgacatcgttctcctcacc
agacccgtaactttaacagagggtgacagggtgaccttgacaacagctgttctcttggca
acagatggcacgggcaaaccagagaggctgctgtatgccgtctccgtgccacctgtccat
ggtcagattgagtacatcaattatcccggcttgcccatctccagcttcagccagttggat
gtcgcggctcagaaggtttgctacgtccatgacaacagccgcgaggccgggacggattca
ttcagtttcactgtgagcaacggattaaaggcaagagatgggtcactggaatttctcacc
aagcgtactgaccgtgtaccaccaaccctactgaataataaaggtctccagataaccgaa
ggtggaacgatggtcatctcgtccaatcatctacaactaacagaccccgacagcccgctg
gagaaactgcattacaaaattatggtgtacccccagtatgggcagctatacctgggcgac
cgcgtcctgcaggacaaccaattcacccaagttgacgtcaacaacctcttcctgtcctac
cgccactatggtggcctggcgaaaccggatcgcttttcattcgttgcttcagatgacgtg
aacaagggcttcctggtcgatggacagttgaaagaagatttggcagcctttgtaattcag
gtggaacatgtggataaaatacccccaaaaattctaaagaaggagagaccatctacagtg
gaaaatctgaaagatgggaaatctgtcatccagatcacatcacgcaacctgaaggcttcg
gatcccgacagcgctgatggtgaacttctctacgtcattctaagatctcccagttttgga
cacttggaaaatgcaaagacaggtgaccacgtaggaagaacgttcacacagaaggatgtc
aatcagaggctgattcgctatgtcattaacccctcgttagatgtgaattccgacagcttt
gaatttcaagtctctgacccggctggaaataaaagtcctcctgagcttcttgaagcgcag
tggtcgatcttacaacttgctgagccgtattatcgggtttgtgaaaactcggggactctc
gccatcacactaatgaggacagggagcagcaaggatccggcatttattggtataaaggtc
caagaactttccgccagacatggcctggattttacacacagcagtgcaagcctcgtccag
tttgacccaggagtttccatgaaatcctggaatctctacctgaagaatgacgggttggag
gaaaatcacgagcttttaaagattttcctgaggaccccgaagaacggcgtgctggggaag
aatcaggaggccacggtggagatcgtggatcccagggatggtcagtgcggaggcctcaac
acgaacgtgagaggccgcggaaaaaacgccgaaatctccactcagatcacgcagatccgg
ctgccaaacacgcgagcctccgtccaagccgcccctcgaatttatcattccatgtccggc
atcgaccgcccgggacaggagctggccttcgctggaagcagcgtcctctatcatgggatg
ccgccattgagcggagctcagcagtcccgaagaagaggagaagtctggctggtaggagct
ccgcccagtctctctgctccagagcgccctcaacatgattccgcccctccagactcaata
cgccaatcgagtaacgggacacaacaggaagagaagctgagaagatgtcccgcagggtgg
actcgccaccagaagtactgctattatctgaattcccgtaaaaagagcacctgggaggag
gccgagcaggactgtgcgcagatgccgggcagtcatttaacaagtgtccagtcacaatcg
gcgatgaggtggctctggaagttcgccagcaagaagccgttttggattggcctgaagtca
ttagagagacactcgccctggtcctgggcaaacggacaacactggacatccagcaacact
tcaagccatcatcttcgattctgtccggagcctcggaggaaagctgcgtcctcgtccgga
ggaggaaagaatggacggaggaaagctgcagggagaggcacagatacatctgctccattg
ccgttataa
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integrated database retrieval system
