KEGG   Rana temporaria (common frog): 120946643
Entry
120946643         CDS       T07929                                 
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
rtem  Rana temporaria (common frog)
Pathway
rtem03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rtem00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    120946643 (EXOSC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rtem03019]
    120946643 (EXOSC1)
Messenger RNA biogenesis [BR:rtem03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     120946643 (EXOSC1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     120946643 (EXOSC1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1 GULLO2-like_3rd
Other DBs
NCBI-GeneID: 120946643
NCBI-ProteinID: XP_040217170
LinkDB
Position
8:5759742..5777542
AA seq 193 aa
MAPVKWCVPGERLCSLEDCTPGHGTYCKHGYVFASLAGYVVKSCDKDTSVLSVVRDTDSL
LLPEVGVIVTCKVVSIHQRFAKVQIMFIGNRALKNTFRGTIRKEDIRATEKDKVEVYKCF
RPGDIVMGKVISLGDSQSNYLLSTAENQLGVVVAHSEAGATMVPISWCEMQCPKTHIKEP
RKVARVQREFLQT
NT seq 582 nt   +upstreamnt  +downstreamnt
atggctccggtgaagtggtgtgtgcccggggagcggttgtgtagtctggaggattgtact
ccgggacacgggacctactgcaaacacggctacgtcttcgcctcgctcgctggttacgtg
gtgaagtcatgtgacaaggatacgtctgtgttatctgtggtgagggacacggattccctt
cttctaccagaagtgggcgtcattgtgacctgtaaggtggtgagcatacaccaaagattt
gccaaagttcagatcatgtttattggcaacagagctctgaagaacacattcaggggtaca
atcagaaaagaagacatccgagcaacagaaaaagacaaggttgaagtttacaaatgtttt
cggccaggagatatcgtcatgggaaaagttatatctctgggagattctcagtccaattac
cttctcagcacagcagaaaaccagctgggagttgtagtcgcacacagtgaagcaggggcg
accatggtgccgatcagctggtgtgagatgcagtgccccaaaacgcacatcaaggaaccc
cggaaggtggcgcgagtgcagcgcgagtttctgcagacctaa

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