Rana temporaria (common frog): 120946978
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Entry
120946978 CDS
T07929
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
rtem
Rana temporaria (common frog)
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rtem03009
]
120946978 (PDCD11)
Ribosome biogenesis [BR:
rtem03009
]
Eukaryotic type
90S particles
Other 90S particles
120946978 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
Suf
OB_RRP5_4th
HAT_PRP39_N
TPR_14
OB_RRP5
TPR_19
TPR_15
DUF7017
ARM_TT21
HAT_Syf1_M
TPR_12
GAAD
PPR_2
Motif
Other DBs
NCBI-GeneID:
120946978
NCBI-ProteinID:
XP_040217796
LinkDB
All DBs
Position
8:complement(59745938..59799160)
Genome browser
AA seq
1787 aa
AA seq
DB search
MEECFPRGGTLKKSEETATKKRQREDDNLFSTYREEAEETGKKKKKKQLKETSKASQHEK
GSFAKVKAVELLNYKDLSVGMLFLGCIKEVKDFELVISLPYNLVGFVQATNICEAYTKLL
NEQVKKEEPVEGLIPLPNLYSPGMLVRCAISNLETTSGGFNSIKLSLNPKLIHGDLAPSS
VHKGMYLTGLVSSEEDHGYLIDLGIAGTKAFLPRHKADVYINQTNKGPALGVGQYLDTVI
DEVKNDGRILRLSVSQSDVTAAIATDEQKWTINNLLPGLVVKAQIQKIFHDHIAVSFLSS
YTGIVDFLHLEPKKANVYQSDQLVKACILWIDKSSKTIRLTFRKTFLQPGRLIKQLSSNW
IGTVHEKCTVKALFKHAGAMFELDGETMAFALKYHLISKLSSDLNRYKEGTVHTGRVVAF
SPMEETILLSLKETVIEEPFWKHEDIQAGQFLEGTVEKIATEGITVNIAKRISGLIPNLH
MADITLNHPEKRYTPGKNIKCRVLNVDPLARKLILTRKKTMINSKLPIIASFHDAKPGMI
THGFIWAVKDFGCIVKFYNDVHGLVPARELSSHYIPVIQDAFYKGQVVRVRVLECNREKE
TLLLSFKIIEENENGEPDNKRERRTLSQWKESGKIVDVRIASKTDAELNVLILPEESPAV
LPKVHLSDHAANCELLFHCLKEGDVLSRVMCLNTSKGQTILTRKTALISCVEKGSCAKDF
SEVQVGMYLTGFVRNIMPYGVFVEFLHGLVGLVPISEVSDKFVTEIGDHFVQGQTVVAKV
TNIDEQKKRFLLTLKMSECAPDDCSADGFSQIGQCCSELQFCKSLMKKNEKLDEGETIYS
VIPGKNLILVVEKLEDNGSVLFSTSQVPGAKKISAVQHKEQEKPLTLGQKVKAVILHVDI
LKAHVHVSMEEALLKKCKENFAENSVHSAVIQHLSEEFAVASLKDTSKLVAVPLKRHFND
TFRFESERLSVGQKISVTLSSMDADQHGIQFAVQNASSGREKVKMPLNLTKRKPLIGEVI
TGTVKSIKPISVLVSITDKLTGNIHASQIVENVLAGALPTSKLRPKQSVTCRVIGGRDLK
THKFLPITHPHLMKSVLELSILPSLLNTEVKVEKHKPLNTYSSGDTVTCYVVKYNKEKQC
LEVEISPGIRGTVEQLLLSSSAKVLKRPEKHFRPGQALTATVVDVEDARKKLSLSLIDLD
ALTEGCITFGCVKSVIPSTGLQITIPFGKTGRASFFQLNDCYDEISLEKFAAGMLVRCCI
LSVGNKIDLSLRESRLNPGSVSKQIDEDLSSIDCLKEGQLIKGFVSAVTDKGVFFRISSS
IDGHILFKNVTSYYVNEIEMYKKHIPEGKLLTAKIISIAKEENHIELSLLSNDTGNPDVI
PESDGYSLRRKKGEKKRRRTNSEREVKSSKKKKSQVSQDDEDSGVEVHYREQKTENEEKK
EASNKPPAPRLQVSSGFSWDVSLNTLKTSLIDGKESSSDSEEDEEECPKIQKTKSNQKKQ
GVEKRPAGKEAKDPSQQPQSINEFERLVLSSPNISANWIQYMDFHLQATELEQARAVAER
ALQTIYFREEQEKLNVWVAMLNMENTYGTEETLLKVFGRAVQYNDPLKAFQHLVEIYIKS
EKFKEADELFNTMIKRFKQEKSVYWKNAAFLLKQGQSEAAHRLLQRAMKCLPEKEHVEVI
SKFAQLEFQLGDPVRAKALFESTLSSYPKRTDIWSVYIDMMVKHGNQKEIRDIFERVIHL
SLAAKRIKFFFKRYLEYEKKHGNEKTVQAVKEKALQYVEAKSSVGTS
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtgtttcccccgtggggggaccctaaagaagtctgaggaaactgccactaaa
aaaaggcagagagaagacgacaacctgttttctacctaccgggaagaagcagaagaaact
ggtaagaagaaaaagaagaaacaactgaaagaaacttcaaaggcatcccagcatgaaaag
ggctcatttgcaaaagttaaagcagtggagctgctaaattataaggacctcagtgttggg
atgttgtttcttggatgcattaaagaggtgaaagattttgaactggttataagcttgcct
tataatctcgtaggctttgtccaagcaacaaatatctgcgaggcctacacaaaattgctt
aatgaacaagtgaaaaaagaggagcctgtggagggtcttattcctcttcctaacctgtat
tcaccaggaatgctggtcagatgtgccattagcaatttggagaccacgtctggtggattc
aatagcatcaaattgtccttaaacccaaaactcattcatggggatcttgcgccatcttct
gtgcacaaaggcatgtatctcactggtcttgtatcgagtgaggaagaccatggctatctc
attgatttgggcattgctggaactaaagctttccttcctcgacataaggctgacgtgtat
ataaaccagacaaacaaagggcctgcactcggagtggggcaatatctggacactgtgatt
gacgaggtgaagaatgatgggagaatcttacgtctgtcagtcagccagtctgatgtgact
gcagccattgccacagatgaacagaagtggactattaataacctgctgccgggcttggtg
gtaaaagctcagattcaaaagatctttcatgaccacatcgctgtatccttcttgtcatcc
tacactggaatagtggatttcttgcatttggaacctaaaaaagcaaatgtgtaccaaagt
gatcagttggttaaagcttgcatcctgtggattgataaatcttccaagaccatacgactg
acgtttcgcaagaccttcctgcaacccgggaggctgataaaacaactgtccagtaactgg
attggcacggttcatgagaagtgtacagtgaaggcactgtttaagcatgcaggagcaatg
tttgagctggatggggaaacaatggcttttgcgcttaaataccatctaatttccaagttg
tcaagtgatctgaaccgatataaagaagggactgtccacactggacgggtggtggcgttt
agcccaatggaggagaccattctactttctttaaaggagacagtcattgaagaacctttt
tggaagcatgaagatatacaggctggacaatttctagagggaactgttgaaaagattgcc
actgaaggaataactgtgaatatcgccaaacgcatcagtggtctcataccaaatctccac
atggcggatatcaccttgaaccatcctgagaagagatatactcctgggaaaaatatcaaa
tgcagagttctaaatgtggatccattagccagaaaactgattcttacccgaaagaaaacc
atgattaattcaaaattgccaataattgccagttttcatgatgcaaagcctggcatgatc
actcatggatttatctgggcagtgaaagattttggatgcattgttaaattctataatgat
gtccatgggcttgtaccagctcgagagttaagctcgcattatatcccagtaatacaagat
gccttttataagggacaggtggttagggtaagggtgttggagtgtaaccgtgaaaaggaa
acattgctactgtccttcaagattattgaagaaaatgaaaatggagaaccggataataaa
agggaaagaagaacgctttcacaatggaaagaatctggaaagatagtggatgtgagaatt
gcaagcaagactgatgcagagctgaatgtattaattctacctgaggagagccctgcagta
cttccaaaagttcatctatctgatcatgcggcaaactgtgagctcctctttcactgtttg
aaggagggtgatgtgctgtctcgagtgatgtgcctaaacacctccaaagggcaaactata
ttaaccagaaaaactgcattaatttcatgtgtagagaaggggtcatgtgcaaaagatttc
tctgaagttcaagttggaatgtatctcactggatttgttagaaatattatgccatatgga
gtatttgtggaattcttacatgggctggtcggactggtccccatctcggaagtcagtgac
aagtttgtgactgaaatcggtgaccattttgtgcaagggcagacggttgttgcaaaagta
acaaacattgatgagcaaaaaaaacgcttcctgttgaccctaaagatgtcagaatgtgcc
ccagatgactgctcagctgatggcttctctcagatcggccagtgttgcagtgagctgcag
ttctgtaagagcctaatgaaaaaaaatgaaaaactggatgagggcgagaccatctattct
gtaataccagggaaaaacttgatacttgttgttgaaaaattggaagataatggttcggtt
ctgttcagcactagccaagtcccgggagcaaagaaaatatcagctgtgcaacataaggaa
caagaaaaacctttaactctgggacagaaagtaaaggctgtgattctacatgttgatata
ttgaaagctcacgttcatgtttccatggaagaagctttactaaagaaatgtaaagagaat
tttgcagaaaattccgtccactctgcagtcatacagcatttgtcagaagaatttgctgtg
gcatctttgaaagatacttcaaagctcgtggctgtcccactcaaaagacactttaacgac
actttccggtttgaatcagaaaggctaagtgtaggtcagaagatttccgtgacgttatcg
tcgatggatgctgatcaacatggaatccaatttgcagtgcagaatgccagctcaggaagg
gaaaaagtcaagatgccactcaatcttacgaaaagaaagccacttattggagaagtgatc
accgggactgtgaaaagcatcaagcccatcagcgtgttggtgtctattacagataaacta
acgggtaacatccacgcctctcagatcgtggagaatgtgcttgcaggcgctctgccaaca
tccaagcttaggcctaagcagagtgtgacttgtcgtgtgataggaggacgagatctcaag
acacacaagttccttcccattactcacccgcacctgatgaagtctgttcttgaactcagt
attcttcccagtcttttgaatactgaagtgaaagttgaaaaacacaaacccctgaatacg
tactcatcgggtgatacagtgacctgctatgtagtcaagtataacaaagagaagcaatgt
ctggaggtagaaatctctcccggtattcgtggcacagtagaacagctgcttctgtcatct
tctgctaaggtcttaaagcgtccagagaagcatttcagaccaggtcaggcgctgaccgcc
actgtggttgatgtagaggacgcgcgtaaaaagctctctttgtcattaatagaccttgat
gctctgacagagggctgtatcacttttggctgcgtaaagagtgtaattcccagtacaggc
ctacagataaccataccgtttggaaagactggaagagctagtttcttccaattaaatgac
tgctatgatgagatctccctggagaagtttgccgctggaatgcttgtgaggtgttgcata
ctctctgttggaaataaaatagacctgtccctaagagaatctcgattaaatcctggaagt
gtcagcaaacagatagatgaagacctctcgtctattgattgtttgaaggaagggcagctc
attaaaggttttgtcagtgcagttacagataaaggtgtatttttcaggatatccagttcg
attgatggccatattctgtttaagaatgtcacctcctattatgttaacgagatagagatg
tataagaaacacattcctgaaggaaagttgcttactgccaaaattatttctatagctaaa
gaggagaatcacatagagctgtcactactttcaaatgatactggaaatcctgatgttatc
ccagagtctgatggctatagcttgaggagaaagaagggtgaaaaaaaaaggagacgaacg
aactctgaacgtgaagtcaagagctctaaaaagaagaaatcccaagtgtcccaggatgat
gaagacagtggagttgaggttcattatcgagaacagaagaccgaaaatgaggaaaagaaa
gaagctagcaataagcctccagcaccccggctgcaggtttcctccggcttttcttgggac
gtcagcctgaatactctcaaaacgtctttaattgatggaaaggagagcagttcagacagt
gaggaggatgaagaggagtgccccaagatacagaaaactaagagcaaccagaaaaaacag
ggagtggagaagagaccagctggaaaagaggcaaaggatccaagtcagcaaccgcagtca
attaatgaatttgagcgccttgtcctcagttcacctaatatctctgctaactggattcag
tacatggatttccacctccaggccactgagctggagcaagcacgggctgtggcagaaaga
gccctgcagactatttacttcagggaggagcaagagaagctgaatgtatgggtggccatg
ctgaatatggagaatacatatggcacagaagagactttgctgaaggtgttcggacgagct
gttcaatacaatgatcctttgaaagcattccaacacttggtggagatttacatcaagtca
gaaaagtttaaggaggctgatgaattgttcaacacgatgataaagcgtttcaaacaggaa
aagtctgtgtattggaaaaatgctgcatttcttcttaagcaaggccagtctgaggctgct
catcgcttactgcagcgggcaatgaagtgtcttccagaaaaagagcatgttgaggtaatt
tcgaagtttgctcagttagagttccagctgggagatcctgtacgagccaaggctttgttt
gaaagcacactgagcagctatcccaagcgaacagacatttggtctgtatatatcgacatg
atggtaaagcatggcaatcaaaaagaaatcagagatatatttgagcgagttatccacctt
agtttagcagcaaaaaggatcaaatttttcttcaagcgttatctggaatatgagaagaaa
catggcaatgagaagaccgttcaagctgtgaaggagaaggctctgcaatatgttgaagct
aagagttctgtgggcacaagctag
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integrated database retrieval system
