KEGG   Rana temporaria (common frog): 120946981
Entry
120946981         CDS       T07929                                 
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
rtem  Rana temporaria (common frog)
Pathway
rtem03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:rtem00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    120946981 (TAF5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rtem03021]
    120946981 (TAF5)
   03036 Chromosome and associated proteins [BR:rtem03036]
    120946981 (TAF5)
Transcription machinery [BR:rtem03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     120946981 (TAF5)
   Coactivators
    SAGA/TFTC/STAGA complex
     120946981 (TAF5)
Chromosome and associated proteins [BR:rtem03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     120946981 (TAF5)
    STAGA complex
     120946981 (TAF5)
    TFTC complex
     120946981 (TAF5)
    SAGA complex
     120946981 (TAF5)
    SLIK complex
     120946981 (TAF5)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz TFIID_NTD2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_EML Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_WDR41 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_VPS8 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_WDR19_1st Beta-prop_SPT8 WD40_RFWD3 Tricorn_2nd Beta-prop_Nup120_160 WD_LRWD1 WD40_like VPS8_N LisH_TPL eIF2A PROPPIN Beta-prop_ACSF4 LisH_PAC1
Other DBs
NCBI-GeneID: 120946981
NCBI-ProteinID: XP_040217799
LinkDB
Position
8:complement(59809275..59827192)
AA seq 761 aa
MAAVPDEASTSVKTEPELLEEVKSESLSGPVTEEPALGNGHGASPKAASSPLPPPLTTSE
PPDRQTLLAVLQFLKKSNLRESVDILRRECGLEPEGSPALSPSGQPTSGEPESTEHSLLS
RVTAGSAAISSTAAGGAPTAVLSAAKGTLNSGPQDQPDVSAVLSAYNQQGDPALYEDYYS
GLKRFIESVLDCHRAELSQLFYPLFVHMYLELVYNQHENKAKSFFDKFHGDQECYYEDDL
RILASLTTKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWSIVQEHLYI
DIFDGMPRSKQQIDAMVGSLSGEAKREANKVKVFFGLLKEPEIEVPLDDEDEEGENEEGK
PKKKKPKKDSIGSKSKKQDPHAPPQTRIPLPELKDSDKLDKIMIMKEAAKRVRLGPDFLP
SICFYSFLNAYQGLTAVDVTDDSSMIAGGFADSTVRVWSLTPKRLRGVKGTADLSLIDKE
SDDVLERIMDEKTSSEIKVLYGHCGPVYATSFSPDRNYLLSSSEDGTVRLWSLQTFTCLV
AYKGHNYPVWDAQFSPYGYYFVSGGHDRIARLWATDHYQPLRIFAGHLADVISTRFHPNS
NYIATGSTDRTVRLWDVLNGNCVRIFTGHKGPIHSLTFTPNGKFLASGGTDGRVLLWDIG
HGLMVGDLKGHTNTIYALKFSRDGEILASGSMDNTVCLWDTVKAFEDLETDDFTTSAGHI
NFNENSQELLLGSYMTKSTPVIHLHFTRRNLLLAAGAFSPQ
NT seq 2286 nt   +upstreamnt  +downstreamnt
atggcggcggtgccagacgaggcgagtacctcggtgaagacggagcccgagctcctggag
gaggtgaagagcgagagcctttcggggccagttaccgaggagccagcgttgggaaatggc
catggcgcctccccgaaggccgccagctctccgctgcctcctccgctcaccacctcggag
cctccggaccggcagacgctgctggctgtcctgcaattcctcaaaaagagtaacctgcgg
gagtccgtcgacatcctccgccgggagtgcggcctggagcccgaggggagtccggctctc
agccccagcggacagccgacctccggggaacccgagagcaccgagcacagtctgctgagc
agagtcaccgcggggagcgccgccatctcctccactgccgccgggggagccccgaccgcc
gtactttccgccgcgaaaggtactttgaatagcggcccacaggaccagccagatgtcagt
gctgttctgtctgcttataaccagcaaggagatccagcgctgtatgaggactactacagt
ggcctaaaaagattcattgagtctgtactggactgtcatcgtgcagagttatctcagcta
ttctaccctctctttgtgcacatgtacctggagctggtctacaatcagcatgaaaataaa
gccaaatctttctttgacaaattccatggggaccaggaatgttactatgaagatgatctc
cgcattttagccagccttaccacgaaagagcacatgaaaggcaatgagacaatgttagac
tttcgaacaagcaagtttgtgctaagaatatcccgggactcctatcagctgcttaagcgc
catctacaggaaaggcagaacaatcagatatggagcatagtacaggaacacttgtacatt
gatatatttgatggcatgccacgtagcaaacagcagatagatgctatggtgggcagcttg
tctggggaagccaagcgtgaagcaaacaaagtcaaggtgttctttggccttctgaaagaa
ccagagattgaagtccctttagatgatgaagatgaagaaggggaaaatgaagaaggaaag
ccaaagaaaaagaagccaaaaaaggacagcataggctcaaaaagcaagaaacaggatcct
catgcaccgcctcagactagaattcctcttccagagctaaaggattctgacaaacttgat
aaaatcatgattatgaaggaagctgccaaacgggttcgccttggtcctgattttttgccc
tcaatctgtttctactcattccttaatgcttaccagggtttgaccgcagtggatgttacg
gatgattccagcatgatcgcaggaggatttgcagattctaccgtgcgtgtgtggagtcta
acgccgaaaagacttaggggtgtcaaaggcacagctgatctcagcttgatagacaaagaa
tcagatgatgttctggaaagaattatggatgaaaagacatcaagcgagataaaggtttta
tatggtcactgcggacctgtctatgcaactagcttcagtccagacaggaattatttatta
tcaagctcagaagatggcaccgtccgtttatggagtcttcagacattcacctgcttggtg
gcatacaaaggacataactatccagtgtgggacgctcagttttctccatatggatattac
tttgtgtctggaggccatgacagaattgctcgtttatgggcaacagaccattatcagcct
ttacgtatatttgctggtcatcttgcagatgttataagtactcgttttcatccgaattct
aattacatagctactggctcaacggacagaacagtcagattatgggatgtattaaatggg
aactgtgtgaggattttcactggacacaagggaccaattcattcattgacatttactcca
aatggaaaatttctggctagcgggggcacagatggcagagtcttgctttgggatattggc
catggtttgatggttggagatttaaagggtcacactaacacaatctatgcacttaaattt
agccgagatggagagattttagcatcaggatctatggataatactgtctgtttatgggat
acagtaaaagcatttgaagacctagaaactgatgactttacaacttctgcaggacatata
aacttcaatgaaaattctcaagagcttctcctaggctcttatatgacaaaatctactcct
gttattcatcttcatttcacacggcgaaaccttcttctggctgctggagcttttagccca
caatga

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