Ruoffia tabacinasalis: VQP54_00480
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Entry
VQP54_00480 CDS
T10899
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rtf Ruoffia tabacinasalis
Pathway
rtf03410
Base excision repair
rtf03430
Mismatch repair
rtf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VQP54_00480 (recJ)
03430 Mismatch repair
VQP54_00480 (recJ)
03440 Homologous recombination
VQP54_00480 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtf03400
]
VQP54_00480 (recJ)
DNA repair and recombination proteins [BR:
rtf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
VQP54_00480 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
VQP54_00480 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VQP54_00480 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
ssDNA-exonuc_C
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WWL40442
LinkDB
All DBs
Position
87548..89881
Genome browser
AA seq
777 aa
AA seq
DB search
MKFNMAQFDWQIRPEFNRDASKSILDNNETTFSSTFLRLCSIRGITSTEELIEKTNQKPQ
LYHDPFLLFEMDKTIERIQKAIEEFEPILIYGDYDADGITSTLIMYETLETIGANVHYYL
PNRLTDGYGPNKARWSELVDELDIRLIITVDNGVAGFEAVDAMNDIGVDCIITDHHELQS
ELPNAFSIIHPKHPSGQYPFPELSGAGVALKVVSALLGEVPTEAVELAAIGTVADMVSLT
DENRTIVLSGLTLIKDSMRVGLQLLLQNEKVNLDNLTSETIGFIIGPRLNAVGRLGDPTP
GLELLKTLDISEAESLLEIVNEKNRERKSITENITREIENRMAQYESIPNIIIEADKDWP
AGVLGIAASRLVKKYQRPAIVFQYIEEKKQYKGSSRSVSKINIFEELVKQNEYLTHFGGH
SQAAGLTIDEENWEGFRQSIHKSFEHYTELLNEPEPIVIDMPLSVNEMTIDFINEVNLLG
PFGTDNPKPQFMVKDGHINTIRFIGADKNHVKLALSQANSQAELQAIGFGKAEQAEGLEN
GSVVSVVGELDINEWNGNRLPQLMLKDMGVNGSQWLDYRSSKIHKDLLSIDKALYLFSHQ
PIADYMSKQLKGAAVVLYENASEVNLAQYKNLIVMEPPIQLQQLKEIVNAQAWSKVYLGS
FVQESKYMAGIPSREEFVNLYKYIFAKQEFTYKTEFESITKSLNLHPVKLKGMFLMFLEA
EFVTIENGRLEFNKEATNNKIDLPHLKSFIQYESEYKSEALLNYQPLDAIKDYFEGN
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
gtgaagttcaatatggcacagtttgattggcaaatcagaccagagtttaatagagacgct
tccaaaagtattttagacaataatgaaacaacatttagttcaacttttttacgcctatgt
tcaattagaggtatcacaagtacagaagagttaattgagaaaacaaatcaaaaacctcaa
ctttatcatgatccttttttactatttgagatggacaaaacaatcgaacgcattcaaaaa
gcgattgaagaatttgaaccgatattaatctatggagattatgatgcagatggtattacc
agtacattgataatgtatgagactttagagactattggggccaatgtccattattattta
ccaaaccgcttaacggacggttatgggccaaataaagcacgttggagtgagttggttgac
gaattagatattcgattaatcattactgttgataatggtgtggctggttttgaagctgtg
gatgcaatgaatgatataggtgtggattgtattattactgatcaccatgaattacaaagt
gaattaccgaatgcattctcaattattcatccaaaacatccttcaggtcaatatcctttc
ccagaattaagtggggcaggggttgctttgaaagtagtcagtgccttgttaggtgaagtt
ccgacagaagcagttgaattggcagcaatcggtacggtggcagatatggtgtctttaacg
gatgaaaaccgaacaatcgtattaagtggattgactctaattaaagattccatgcgcgtt
ggtttacaattattattacaaaatgaaaaagttaatttagataacttaacgagtgagaca
attggctttattattggaccacgtttaaatgcagttggtcgattaggagatccgacgccg
ggcttagagttattgaaaactttagatatttctgaagcggaatcgttattagaaatagtg
aatgaaaaaaatcgtgaaagaaaatctatcaccgaaaacattactagagaaattgaaaat
cgtatggctcaatatgaatcgattccaaatattattattgaagcagataaagattggcct
gccggagtcttagggattgctgcaagtcgtttagttaagaaataccaaagaccagcgatt
gtcttccaatacatagaagagaaaaagcaatataaaggaagttcaagaagtgtctctaag
ataaatatcttcgaagaactcgttaaacaaaatgagtacctgactcacttcggtggtcat
agtcaagcagcaggattaacgattgatgaagagaattgggaaggctttagacaaagcatt
cacaaaagctttgaacactacactgaattactaaacgaacctgagccaattgtcattgat
atgccgttaagtgtgaatgaaatgacgattgattttattaatgaagtgaacttattagga
cctttcggtacggataatccaaaaccgcagtttatggttaaagatggtcatataaacaca
attagatttattggagcagataaaaatcatgttaaacttgccttaagtcaagcgaatagt
caagctgaattacaagccataggctttggtaaggcagagcaagctgaagggttagagaac
ggcagtgtggtatctgtcgttggtgagttagatataaatgaatggaatgggaaccgtctt
ccgcagttaatgctgaaagatatgggagttaatggctctcagtggttagattaccgctca
agcaagattcacaaagatttgttaagtatagataaagctttatatttattctcccatcag
ccgattgcagattatatgtccaagcaattgaaaggtgcagctgttgtattatatgagaat
gcatcagaagttaatttagcccaatataaaaacctcatcgtaatggagccgccgattcaa
ttacaacaattgaaagagatagtgaatgcacaagcttggtccaaagtctacctaggatca
tttgttcaggaatcgaaatatatggcaggtattccatctcgagaagagttcgttaatttg
tataaatatatctttgccaagcaagaattcacatataagacagaattcgaaagtataaca
aaatcattaaatttacaccctgtaaaattaaaagggatgtttttgatgtttttggaagca
gaatttgttacaattgagaatggtcggttagagtttaataaagaagcaacaaataataaa
attgatttacctcatttaaagtcttttattcaatatgaaagtgaatataagtcagaggct
ttattaaattatcagccgttagacgctattaaagattattttgaagggaattaa
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