Ruoffia tabacinasalis: VQP54_00970
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Entry
VQP54_00970 CDS
T10899
Symbol
addA
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
rtf Ruoffia tabacinasalis
Brite
KEGG Orthology (KO) [BR:
rtf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtf03400
]
VQP54_00970 (addA)
Enzymes [BR:
rtf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VQP54_00970 (addA)
DNA repair and recombination proteins [BR:
rtf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
VQP54_00970 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
DEAD
PDDEXK_1
AAA_12
ResIII
AAA_16
AAA_30
T2SSE
Motif
Other DBs
NCBI-ProteinID:
WWL40528
LinkDB
All DBs
Position
199672..203604
Genome browser
AA seq
1310 aa
AA seq
DB search
MKKMMNKIEPKPLNSNFNDEQWEAIQHKGSNILVSASAGSGKTTVLIERIFNHILQGFAN
VDELLVVTFTEAAANEMKERMESRLKDAVNETLNPEEQRRLTHQLSLLPKANIQTLHSFC
LEIIQNFFYLIDFNPNFSLVTDQTQVQLIYQDVWDDMIASIHDSNSEIEAISPEIYQSLL
ARYGSVRSDEALFDTIIDIYKFARSQTNPTLWLEDANNASANFEAFKDSLLYKQTIKFVL
ETNSLQAIKLLETATNLLHSLSDEGVSKYEPIIQEDLQQANFLFELSREDKLEDLFSQAS
SIQFGKWKANKKSSEDYEIVAELKELRDEAKDIITKNIVPIFTYEYKLTEKVEQEQGNII
YSLSQLAKLFMDRLAEHKTSINMIDYNDLEHLALDILAPLNQENEQRQVSSAAMFYHDKF
KEIMIDEYQDINDIQNDILYFLSHETRTELNDNLFMVGDVKQSIYGFRMAEPSLFLNRYL
NYANSSEDKLIILDKNYRSRDEILQFTNFVFERVMDSEFGEMNYGKAESLTTGNKSFEPE
APHEDFNIQLLLYEKENQESEEIDEAVSDEIALADTSLEAESHIIAQDIRNKVAEGYLVY
DKKLKKQRPVIFSDFVILTPTRKPFLIAQRILESYDVPIYAQKVENYFQRQEVQLMLALL
KLIDNPLQDIPLVAILRSYFVQLDDEALSKIRIHSPNGLFYEAVIAYLNDPEIQESNKDI
HQKLSNFFKQLTHWNALSKRISLVDLIWTIYQETSFLDYVAGLNNGVQREANLHSLYEKA
LEFEQSQYKGVFGFIRYIEKVMQQQNDLAEPVLLDGEQNFVRLMTVHASKGLEFPIVYLM
DTAKKFNLQDARSKSYIASKHFGISSDYYDFENRIKFDSFTKQAFKIEKENMLKAEEMRK
LYVALTRCEQKLMIVGTIKNEEEWHTKQEATQDKSNHETLMVPLQERQSASSWLDWIRQA
IAKGQTDSGLAEFNLSQINIEFIDLQSIADLQIQYQIPVNYSKKPNLAKQIGRLDVNDLS
DQSVYNHMNQLFNYNYTYELATNTSSYQSVSELKRLYEEPRIDKIAYFEDRSGNSNESQN
VEEHESSSSIQGIRYTEDTFEPPKFIDNLETKPNYAEIGSATHFLLQQLEFSILAEKNQT
QLKEILIETSQSLVETKHISKELAELINYDSVITFIQSELGQLTIEHANRVKKEQAFSYL
TPALKLFENNIAAENMKELSEDQLLIHGVIDNFIEFDEDIVIYDYKTDRYKPYANMSKEK
QIEQIVNKYRFQISLYSKALTITYNKPIRQAYIVLLDFGVSIPIDTMYQL
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagatgatgaataagatagaacctaaaccgcttaattcgaattttaacgatgaa
caatgggaagcaatccaacataagggaagtaatatccttgtttcagcttccgccggttca
ggaaaaacgacagtattaattgaacggatttttaatcatatattgcaaggatttgcgaat
gttgatgagcttttagtcgttacctttaccgaagctgcagcgaatgaaatgaaagaaaga
atggagagcagattaaaagacgcagtgaacgaaacactgaatcctgaggaacaaagacga
ttaacacaccaattatctcttttacctaaggcaaatattcaaacactgcattcattctgt
ctagaaatcatccaaaatttcttttatttaattgattttaatcctaatttttcattagta
acagatcagactcaagtacagttaatttatcaagatgtctgggatgacatgattgcttca
atccatgattcaaattctgaaattgaagctatttcgcctgaaatttaccaatcactttta
gcgcgatacggaagtgtgcgttccgatgaagcattatttgatacgatcatcgatatttat
aaatttgcccgctcacaaacgaatccaactttatggttagaagatgcaaataacgcaagt
gctaactttgaagcatttaaagatagtttattatataaacaaacaattaaatttgtgctt
gaaaccaatagcctacaagccataaaattactagaaacagcgacaaatttactgcattca
ctttctgacgagggcgtttctaagtatgagccaatcattcaagaagacttacaacaagca
aattttttatttgaattgtcgagagaagataaacttgaggatttattctcacaagcgagt
tcaattcaatttggcaaatggaaagcaaataagaaatcttccgaagactatgaaatagtg
gctgaactcaaagaattacgagatgaagcaaaagacattatcactaaaaacatagtgcca
atctttacttatgaatataagttaactgaaaaagtggaacaagagcagggaaacattatt
tattccttatctcaattagctaaactatttatggaccgattagctgaacataaaacatcg
ataaatatgattgattataatgatttagaacatctcgccttagatattttagcgccatta
aaccaagaaaatgaacaaagacaagtcagttcagctgcaatgttttatcatgataaattt
aaagaaataatgattgatgagtaccaagatattaatgatatccaaaatgatattttatac
tttttatcacatgagacacgaactgaattaaacgataacttatttatggtaggggacgta
aagcaatcgatttatggttttagaatggcagagccgagtttatttttaaatcggtattta
aactatgcaaattctagcgaagataagctcattatcttagataaaaattaccgttcaaga
gatgaaatactgcaatttacaaacttcgtatttgagcgggtgatggattcagaatttggt
gagatgaattatggaaaagcagaatcacttacaactgggaataaatcttttgaaccagaa
gcgccccatgaagattttaatattcaactacttttatatgagaaagaaaatcaagagagt
gaagaaatcgatgaggcagtcagtgatgagattgcattagcagatacttcattagaagct
gaaagccatattatcgctcaagatattcgaaataaagtagcagaaggttacttagtctat
gataagaagttgaaaaaacaaagacccgtaatattctcggattttgttattcttacgcca
acacgaaagcctttcttaattgcacaacgaatcttagaaagttatgatgtaccgatttat
gctcaaaaagttgagaattattttcaaagacaagaagttcaattaatgttagcgttatta
aaactaatcgacaatcctttacaagatatcccattagttgcgatattacgatcatatttt
gttcaattagatgatgaagccttaagtaagattaggattcattctcccaatggcttgttc
tatgaagcagtcattgcttacttaaatgacccagaaatccaagagagtaataaagatatc
catcagaaattgagtaacttcttcaagcaattgacacattggaacgccttgtcaaaacgc
atttccttagtggatttaatttggacgatttaccaagaaacatctttcctagattatgta
gcaggtttaaataacggagtccaacgcgaggcgaacttacattccttgtacgagaaagca
ttggaattcgagcaaagccaatacaaaggcgtctttggctttattcgctacatagagaaa
gtaatgcaacaacaaaatgacttagcagagccagttttactcgatggggaacaaaatttt
gtgagactgatgactgtacatgctagtaaaggtttggagtttccaattgtatatctaatg
gatacagctaaaaaattcaatttacaagacgcaaggtcgaaatcatacatcgcttcaaaa
cactttgggattagttctgattactatgactttgaaaaccggattaaatttgactccttt
acaaaacaagcatttaagattgaaaaggaaaatatgttaaaagcggaagaaatgcgtaaa
ttatacgtagccttaacgagatgtgagcaaaagctcatgattgttggaacgattaaaaat
gaagaagagtggcatactaaacaagaagcgacgcaagataaaagtaatcatgagacatta
atggttcctttacaggagcgccaaagtgcttcaagttggttagattggattagacaagcc
atcgctaaaggtcaaactgattccggtttagctgaatttaatctatcgcaaatcaatatt
gagtttatcgatttacaaagcattgcagatttacaaattcaatatcaaataccagtaaat
tactcaaagaaacccaatttagctaagcaaattggacgtcttgacgtcaatgatttaagt
gatcaaagcgtctataatcatatgaatcagttatttaattataactacacatatgaatta
gcgacgaatacctcaagttatcaatctgtatctgaattgaaacgcttatacgaagaaccg
cgtatcgataaaattgcttatttcgaagaccgtagtggtaactcgaacgaaagccaaaat
gttgaagaacacgaaagctcttcgtctattcaaggaattcgatatactgaagatacgttt
gaaccacctaaattcatcgataacttagagacaaaaccaaattatgctgaaatagggagc
gcaacacacttcttattacaacagttagagttttcgattttggcagagaaaaatcaaaca
caattgaaagaaattttaattgaaactagccaatctctcgttgaaacgaaacacataagt
aaagaattggccgaattaatcaattatgacagtgtcatcacatttattcaaagtgaatta
ggtcaattaacgattgaacatgctaatcgggttaagaaggaacaagctttttcatactta
actccagcattgaaactgtttgagaataatattgcagctgagaatatgaaagaattatca
gaagatcagttgttaattcatggagttatcgataatttcattgaatttgacgaagatatt
gttatttatgattataaaacggatcgatataaaccatacgcaaatatgtcaaaagaaaaa
caaattgaacaaattgtaaacaaatatcgatttcaaattagtttgtattcaaaagcactg
acaattacttacaacaaaccaattaggcaagcatatatagtcctattagattttggtgta
tccattcctattgatacaatgtaccaactttaa
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