Ruoffia tabacinasalis: VQP54_02200
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Entry
VQP54_02200 CDS
T10899
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
rtf Ruoffia tabacinasalis
Pathway
rtf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rtf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VQP54_02200 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtf03400
]
VQP54_02200 (uvrB)
DNA repair and recombination proteins [BR:
rtf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VQP54_02200 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VQP54_02200 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_19
AAA_30
AAA_22
UvrD-helicase
AAA_7
AAA_16
AAA
DUF1131
Motif
Other DBs
NCBI-ProteinID:
WWL40754
LinkDB
All DBs
Position
complement(449617..451611)
Genome browser
AA seq
664 aa
AA seq
DB search
MDKFKLISQYEPNGDQPQAIKELVNGLNNGEKEQVLLGATGTGKTFTIANVIKEVNKPTL
VLAHNKTLAGQLYSELLEFFPENSIEYFVSYYDYYQPEAYVPSSDSYIEKEAMVNDEIDK
LRHSASSALLERRDVIVVASVSCIYGLVDPEMYRNQVLSIRKGQEVSREEVLRQLIDMQF
VRNDIDFQRGTFRVRGDVVEVFLASRDSEVIRIEFFGDEIDRIREVDVMTGEIKNDVDHY
PIYPATHFVADQDQTLQAVTTIKAELEERLEELRSENKLLEAQRLEQRTTYDLEMLLEMG
YCNGIENYSRHMDGRAPGEQPYTLIDFFPDDFLIVVDESHMTMPQIRGMYNGDRARKQQL
IDYGFRLPSALDNRPLKLEEFEKHVNQIIYISATPGPYELEHTDDEYVEQIIRPTGLLDP
VVEVRPIKGQIDDLIQEITKRTERDERVFITTLTKKMSEDLTDYLKEVDIKVKYLHSDIK
TLERTEIIRDLRLGIFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRGERALIQTIGR
AARNENGQVIMYADKMTDSMTKAIEETERRREIQIAYNKEHGITPKTIKKEVRDLIRITH
EVEGEEQEENILAQFKQLSRLQREEELERLEMEMRQYAKDLNFEAAADLRDIVMELKATF
FKRK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggataaatttaaattaatatctcagtatgagccaaacggtgatcaacctcaagcaatt
aaagagttagttaatggattaaataatggtgaaaaagaacaagtgctattaggtgcaact
ggtacaggaaaaacgtttacgattgccaatgtaattaaagaagtaaataaacctacttta
gttttagctcataataaaactttagcagggcaactgtatagtgaattattagagtttttc
ccagagaattcaatcgaatactttgtgtcttactatgattactatcaacctgaggcttat
gttccatcatcggattcatatattgaaaaagaagccatggtcaacgatgaaattgataaa
ttacgacattccgcttcatccgcattattggagcgacgagatgttattgttgtcgcatca
gtttcttgtatttacgggttagtggatccagagatgtatcgtaatcaagttttatcaatt
agaaaagggcaagaagtatcgcgcgaagaagtattgcgtcagctaattgacatgcagttt
gttagaaatgacattgactttcagcggggaacttttagagtccgtggagatgtggttgaa
gtgttcttagcttcgcgtgatagtgaagtgattcgaattgaatttttcggtgacgaaatt
gatagaattcgcgaagtagatgtaatgaccggtgagattaaaaatgacgtcgatcattat
cctatctatcccgcaactcacttcgtggctgaccaagatcaaacattacaagctgttact
acgattaaagcggagttagaagagagattagaagaattgcgttctgagaataaactctta
gaagcacaacgtttagaacaacggacgacctatgatttagaaatgctccttgagatgggg
tattgtaatgggattgagaactattcaaggcatatggatgggcgtgcgcctggagagcaa
ccttatacattaattgacttcttcccagatgatttcttaattgtagtggacgagtctcat
atgactatgccacaaattcgagggatgtataatggggaccgtgctcggaagcaacaatta
attgattatggtttcagattacctagtgctttagacaatagaccactaaagttagaagag
tttgaaaagcatgtcaaccaaatcatctatatttcagctacaccaggtccatatgaatta
gaacatactgatgacgaatatgttgagcaaattattcgcccaactggtttattagaccca
gtggttgaagtccgaccaattaaaggtcagattgatgatttaattcaagaaattacgaaa
cgaactgaacgcgatgagcgtgtgtttattacgaccttgacgaagaaaatgtctgaagac
ttaacggactaccttaaagaagtcgatattaaagtcaaatacttacatagtgatattaaa
acgttagaaagaacggagattatccgtgatctaaggttaggtatttttgatgtccttatc
ggtattaacttactaagagaggggattgacgtaccagaagtgtcgcttgttgctatctta
gatgcggataaggaagggttcttacgaggtgaacgtgcattaattcaaacgattggacgt
gcggctcgtaacgagaatggtcaagtaattatgtatgcagataaaatgacggactcaatg
acaaaagccattgaagaaacagaacgtcgtcgtgagattcaaatcgcttataataaagaa
catggcattacgcccaaaacgattaagaaagaagttcgtgaccttattcgaattacgcat
gaagttgaaggtgaggaacaagaagagaatatcctagcccaattcaaacagctctctcgt
ctgcaacgtgaagaagagcttgaacgacttgagatggagatgcgtcaatacgctaaggat
ctcaactttgaagcggcagcagatttaagagatattgttatggagcttaaagcaactttc
tttaaacgaaaataa
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