Ruoffia tabacinasalis: VQP54_02345
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Entry
VQP54_02345 CDS
T10899
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rtf Ruoffia tabacinasalis
Pathway
rtf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VQP54_02345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtf03400
]
VQP54_02345
Enzymes [BR:
rtf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VQP54_02345
DNA repair and recombination proteins [BR:
rtf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VQP54_02345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
AAA_22
HHH_5
RsgA_GTPase
UvrD_C
AAA_28
nSTAND3
AAA_12
NPHP3_N
AAA_29
SLFN-g3_helicase
AAA_16
cobW
T2SSE
Motif
Other DBs
NCBI-ProteinID:
WWL40779
LinkDB
All DBs
Position
complement(480766..483225)
Genome browser
AA seq
819 aa
AA seq
DB search
MSQGEELVVGIVEAIYFENPSNFYKVVRISVDQDETDLLLDEELVITGMFASLHLDTEYQ
FFGKLTNHPKYGEQFAVTRYQQKAPTSYEGLVDYLSSSRFKGIGKVLAERIVDELGQDAI
DTIISDSNALKDINGLSKAKAEDLREGLLRHQGTERIFMQLSEWGFGPALSDKIYRAYES
ETITVIKENPYKLIEDIDGIGFSKADQLAEQLDFDAEDINRIVAGIYVSVLELSNSDGDT
YVPEEVAKKNGRKLLESSRRYLISDELLERAVELAVQNEQLMRLVDNLMIPSLYYAELNI
VKKIDNYYQYEQIERFEEDEIDEAIEEVVKISGINYDESQRQALKTSIQSPISVITGGPG
TGKTTLIKGIILLHSILHDYDLEQATKKVDENPVLLSAPTGRAAKRMQETTGLPASTIHR
LIGFNRDSQVDEFYAAELDGSLLIVDEMSMVDTWLMNWLVQAIPYHLQVVLVGDKDQLPS
VGPGKVFSDLIESDVLPVLRLEKIYRQAQGSTIIELAHNIRQGFLPEDFLMKQHDRSFIQ
APAQQIGHVVQQIIEAAKKKGFDATNLQVLAPMYKGPAGINALNTLLQELLNPPKPRKRE
INHFDSVFRVGDKVLQLVNNSEDGVYNGDIGRIESIHFKKETASKVEEITVSFDNVELVY
KKSDLDQLTLAYCTSIHKAQGSEYPLVILPLVDMFSRLLQKDILYTAITRAQSSLIMLGN
PDSFYKAVTSEKEPRKTFLRDLLMVQFDKEASEDEDDEAEEQTKEEEPSQQTPEAEAIQM
ELEEQIEEPLELTEATINQIDPMINMDGVTPYDIMSSTN
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaggtgaagagttagttgttggtatcgttgaagcgatttattttgagaatccg
tcgaatttttacaaagttgttcgcatcagcgttgatcaagacgaaacggacttattgtta
gatgaagaattagtaattacgggtatgtttgcttcacttcatctcgatacggaatatcaa
ttttttggaaagttaacgaatcatcctaaatacggagaacagtttgctgtaacacggtat
caacaaaaagctccgacatcatacgaagggctcgttgattatttatcaagtagccgtttt
aaaggcatagggaaagtattagcggagcgaattgtcgatgaattaggtcaggatgcgatt
gatacgattatatcggactcgaatgcattgaaagatatcaatggcttatccaaagcaaag
gccgaggacttacgcgaagggctactgcgtcatcaagggaccgagcgtatttttatgcaa
ttaagcgaatggggctttggacctgctttatcagataaaatataccgagcttatgaaagt
gaaaccattactgtaataaaagagaatccatataaattaattgaagatatcgatggcatc
ggctttagtaaagcagaccagttagcagaacaattagactttgatgctgaagacattaac
cggattgttgcgggaatttatgtatctgtacttgaattatcgaatagtgatggtgatact
tatgttcccgaagaagtggcaaagaaaaatggccgaaaattattagagtcgagtcgtcga
tacttaatttctgatgagttattagagcgagcagtagaattagccgtccaaaacgaacag
ttaatgcgcttagttgataatttgatgataccaagtttgtattatgctgaattaaacatc
gttaagaaaatcgataattactatcagtatgaacaaattgaacgctttgaagaagatgaa
atcgatgaagcgattgaagaagtcgttaaaatcagtggaataaattatgacgagagtcaa
cggcaagccctgaagacatccattcaatctcccatatcagtcattactgggggacctggg
acaggtaaaacaactttaattaaagggattatcttgttacattcaatcttacatgactat
gatttagaacaagcaacaaaaaaagtggatgaaaatcctgtgttactttcggcacctaca
ggacgcgcagccaaacgaatgcaagaaacaaccggcttaccagcttcaaccattcatcga
ctgattggttttaatcgcgattcacaggtcgatgaattttatgcagccgaattagatggc
tcattgttaattgttgacgagatgtcgatggtcgatacttggctcatgaattggcttgtc
caagccataccttatcatttacaagttgtcttagtaggagataaggatcaactcccttca
gtaggaccaggtaaagtctttagtgacctgattgaatctgacgtcttgccagtgcttcgc
ttagagaaaatctaccgacaagcacaaggaagtacgattattgagctagcgcataatatt
cgccaaggttttttaccagaagatttcttaatgaaacaacacgatcgatcatttattcaa
gctccggctcaacaaatcggtcatgtagtgcaacagattattgaagcagctaagaaaaaa
ggttttgacgcaactaacttacaagtgttagcgcctatgtataaaggaccagccggcatt
aatgcactcaatactttattgcaagaattattaaatccacccaaaccgagaaaacgcgaa
ataaatcattttgattctgttttcagagtaggagataaggtattgcaactagtaaataac
tccgaagatggtgtatataacggagatattggacgcattgagtcgatacattttaagaaa
gagacggcttcaaaagtagaagaaatcaccgtatctttcgataatgttgaacttgtatat
aagaaatctgatttagatcaactgacattagcgtattgtacatcgattcataaagcgcaa
gggagtgaatacccactcgttatcttgccgttagtcgatatgttctctcgattacttcaa
aaggatatcctatatacagcaattacacgggcacagtctagcttaattatgcttgggaat
ccagatagtttctacaaagctgtgacaagcgaaaaagaaccccgtaaaaccttcttaagg
gatttattaatggttcaatttgacaaagaagcgtccgaagatgaggacgatgaagcggaa
gaacagactaaagaagaagaaccgagtcaacaaactccagaagcagaagcgattcaaatg
gagttagaagaacaaattgaagaacctttagaattgacggaagcgacgattaaccaaatt
gatccaatgattaatatggatggtgttacaccttatgatattatgtcttcaacaaattaa
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