Ruoffia tabacinasalis: VQP54_03340
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Entry
VQP54_03340 CDS
T10899
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
rtf Ruoffia tabacinasalis
Brite
KEGG Orthology (KO) [BR:
rtf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtf03019
]
VQP54_03340
Messenger RNA biogenesis [BR:
rtf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VQP54_03340
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Motif
Other DBs
NCBI-ProteinID:
WWL40957
LinkDB
All DBs
Position
complement(685345..686292)
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AA seq
315 aa
AA seq
DB search
MAQLFEIKNGEQFGIFVLIKAADIRTARNGKPFIAFRFQDRSGSMDGMFWSATEEEVNLY
QAGKVVFLRGKRDTYQGTPQVKIESMRLAEAGEPDDPTLYVEKVKVKREDLEAELDDALL
LITEPNIARVVRKIIHQTQEDFFVHPAAKRLHHAMAGGLSFHTLSMVKIARNLLSIYPQL
NPSLLIGGIILHDIGKTVELSGAISTEYTLKGKMMGHIVIISEMIDRACAEIGVDPENES
ILLLKHVVLAHHGKMEFGSPVLPQLLEAELIHYIDDMDAKINMITEVLDKTEPGEFTSQI
FALDRRQIYKPKFQK
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
gtggcacaattatttgaaattaaaaacggagaacaattcggtatttttgttctaattaaa
gcagcggatattcgtacagcgcgtaatgggaaaccgttcatagcctttcgattccaagac
cgttcaggttcgatggacggtatgttctggtcagcaactgaagaagaagtgaacttatac
caagcaggtaaagttgtttttctgagaggtaagagagatacatatcaaggaacaccgcaa
gtaaagattgaatccatgcgcctagcagaagcgggtgagccggatgatccaacgctttat
gttgagaaagtgaaggttaaacgtgaagacttggaagcagaacttgatgatgcgttatta
cttataactgaaccaaacattgcacgtgtcgttcgtaaaatcattcaccaaacgcaggaa
gacttctttgtccatccagcagccaaacgattacaccatgccatggcaggtggactaagc
ttccatacattatcaatggttaaaatcgcacgtaatttattatcgatttatccacaactg
aatccaagtttattaattggaggaatcatccttcatgatattggtaaaactgttgaatta
agtggagccatctcaacagagtatacccttaaagggaagatgatgggacacatcgtcatt
atctcagagatgattgaccgtgcgtgtgctgaaattggcgttgatcctgagaacgagtca
atcttattactgaaacatgtggtattagctcaccatggtaaaatggaatttggtagtcct
gtcttaccacaattactagaagcagagttaattcactatattgacgatatggacgctaaa
atcaacatgattactgaagtcctagataagactgagccaggcgaatttacatcacaaatc
tttgcactagaccgccgtcaaatctataaacctaaattccaaaaataa
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