Ruoffia tabacinasalis: VQP54_06000
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Entry
VQP54_06000 CDS
T10899
Name
(GenBank) hypothetical protein
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
rtf Ruoffia tabacinasalis
Pathway
rtf03030
DNA replication
rtf03430
Mismatch repair
rtf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VQP54_06000
03430 Mismatch repair
VQP54_06000
03440 Homologous recombination
VQP54_06000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtf03032
]
VQP54_06000
03400 DNA repair and recombination proteins [BR:
rtf03400
]
VQP54_06000
Enzymes [BR:
rtf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VQP54_06000
DNA replication proteins [BR:
rtf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VQP54_06000
DNA repair and recombination proteins [BR:
rtf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VQP54_06000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DUF5622
Vps62
Motif
Other DBs
NCBI-ProteinID:
WWL39342
LinkDB
All DBs
Position
complement(1233645..1234604)
Genome browser
AA seq
319 aa
AA seq
DB search
MGQLSHYFYELIHQNRLVHGYVFTGDDYESKEHVSTELIKALGCLNKDEVGQPCGVCEHC
QKAQNHQLADVVSIQPDGQSIRVNQIRELKEWLSTSPIESNFKLAIIESAETMNPSSANA
LLTFLEEPVEGVYLVLYTQDKSNLLPTIQSRVQSVHFPRANVSERVAYYIETGVSEAHAR
IFAKMSSETAQRLVSDYEEADVTNWFKSLNYFYSTLAHRNLHAVILVQTQLKNSLSVQQA
LDGMDYLLILNHSMLRILSNTEIENLTQAYFINEVIKTKQPSLAHILELNDLILETKQRL
QANVAPQLATERLAILASQ
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggggcaattaagtcattatttttatgaattaattcaccaaaaccgactcgtgcatggc
tatgtctttacgggtgatgactatgaaagtaaagagcatgtctcaaccgaactgattaaa
gcattaggttgtttgaataaggatgaggtaggtcaaccttgtggcgtatgtgaacattgt
caaaaggcacaaaatcatcaattagctgacgtcgtttcaattcaaccggacgggcaatcc
attcgagtgaatcaaattcgtgaactgaaagaatggttatcaacgagtccgattgaaagt
aacttcaagttagcaatcattgaaagtgctgaaacaatgaacccttcgagtgcgaatgcc
ttactgacctttttagaagaacctgttgaaggagtttacttagttctttatactcaagac
aaaagtaatctgctgccaacgattcaatcccgtgttcaaagtgttcactttccaagagcg
aatgtaagtgagcgagtagcttactatattgaaactggggtatccgaggcgcatgcccgt
attttcgcaaagatgtcttcggaaactgcccaaagacttgtgagcgattatgaagaagca
gacgtaacgaattggtttaaatcgttgaattatttttattcaacactggctcataggaat
cttcatgcagtgatcttggttcaaacccaactaaaaaactccttgagtgttcaacaggct
ttagacggtatggattatttattaatcttaaatcatagcatgttgagaatattgtcaaat
actgaaatagagaatttaacccaagcttattttattaacgaagtgattaaaacgaaacaa
ccgtcgctagcacatattttagaattaaatgatttgattcttgagacgaaacaacgatta
caggcaaatgttgcgcctcagttagctacggaacgccttgctatcttagcaagtcaataa
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