Ruoffia tabacinasalis: VQP54_06575
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Entry
VQP54_06575 CDS
T10899
Name
(GenBank) helicase-related protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rtf Ruoffia tabacinasalis
Pathway
rtf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VQP54_06575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtf03019
]
VQP54_06575
03009 Ribosome biogenesis [BR:
rtf03009
]
VQP54_06575
Enzymes [BR:
rtf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VQP54_06575
Messenger RNA biogenesis [BR:
rtf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VQP54_06575
Ribosome biogenesis [BR:
rtf03009
]
Prokaryotic type
rRNA helicases
VQP54_06575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DbpA
DEAD
Motif
Other DBs
NCBI-ProteinID:
WWL41438
LinkDB
All DBs
Position
complement(1352199..1353215)
Genome browser
AA seq
338 aa
AA seq
DB search
MSSDEADEMLNMGFIDQVQEVMDYLPKECQTMLFSATMPTEIVRLVSMYMRSDRTSVRME
SSVENTPKILHSFIHVESSSKEKLLLDLLTIENPDACIIFCNTKDTVDSVVDYLFKADLP
VDKLHGGMEQNDRLAVMNEFRSGKLRYLVATDVAARGINIDHVTHVINYDVPFEKESFIH
RSGRTGRAGKTGLALTMVSNQDQRRWEEICDYTFEGNYEFTEVFTPNERAVNRAKSSFEK
KIQTRVTPKAARNKELNKNITKVYFNVGKKKKLRAIDFVGTLTNIKGMTAEDIDIITIQE
NVTYVDILNGKGPHVISEMQNRTIKGKTLKVRKARKRR
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atatctagcgatgaagcggatgaaatgttgaatatgggatttattgaccaagtccaggaa
gtaatggattacctgccaaaagaatgccaaaccatgctgttttctgcgactatgcctaca
gaaattgtacgtttagtcagtatgtatatgcgttccgatcgaacttctgtccgaatggaa
tcgtcagtagaaaacacacctaaaattttacattcatttattcatgtggaaagttcttca
aaagaaaaattattactcgacttattaacgattgaaaatccagatgcctgtataattttt
tgtaatacaaaagatacggtagattcggttgttgattatttatttaaagccgatttacct
gtcgataaattacacgggggtatggaacaaaatgaccgcttagctgtcatgaatgagttc
cgttctggcaaactgcgctatttagtagcgactgatgtagctgctcgaggaattaatatt
gatcatgtgacacacgtgataaactatgatgttccctttgaaaaagaaagctttatacat
cgatcaggacgaacgggtcgagctgggaaaacaggattggctttaacgatggtaagtaat
caagatcaaagacgttgggaagaaatttgtgactataccttcgaaggtaactatgagttt
actgaagtttttacacctaacgaacgtgcggtcaatcgagcaaaatcgtcttttgaaaag
aaaatacaaacacgagtcacaccaaaagccgcaagaaataaagaattaaataagaacatt
accaaggtttatttcaatgttggcaagaagaaaaaattacgagctattgattttgtcggc
actttaacgaatattaaaggaatgacagctgaagatatcgacattatcacgattcaggaa
aatgtgacttatgtagatattttaaatggaaagggccctcatgtcatttctgaaatgcaa
aaccgcacgattaaaggtaaaacattgaaagttcgtaaagcgcgcaaaagaagataa
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