Ruoffia tabacinasalis: VQP54_09895
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Entry
VQP54_09895 CDS
T10899
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rtf Ruoffia tabacinasalis
Brite
KEGG Orthology (KO) [BR:
rtf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rtf03009
]
VQP54_09895 (rlmD)
Enzymes [BR:
rtf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
VQP54_09895 (rlmD)
Ribosome biogenesis [BR:
rtf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
VQP54_09895 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
TRM5-TYW2_MTfase
PCMT
Methyltransf_15
Cons_hypoth95
Methyltransf_11
PrmA
Methyltransf_23
RrnaAD
mRNA_G-N7_MeTrfase
Methyltransf_4
UPF0020
Methyltransf_12
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
WWL40023
LinkDB
All DBs
Position
2007978..2009381
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AA seq
467 aa
AA seq
DB search
MRKGDYPTEVLDVEIDYVDSKGRGFVHYTHAPDRGSNGRTLKIITSNVVPGDVVRVTVDN
AKGRYKAVVPYDKLLKPGPTRNLDMPTHFDVSGAAPLQYMKYPDQLEFKANIVKESLEQA
GFDTALIQPIIGMDEPNRYRNKMELSFGPTGELGMHQQGNYRKVIDLNDSVIAPKVMIEV
KHIVSQWQKDNDFKGYDKDKHTGLLRNLMMRTSFETGELMVVVYATEKPEAHPEAVKDLT
DRLSEAFPSLASLVWIEYTNISGRIQSEESFTLYGRDYIYDELGGYRYRIWHDTFFQPNP
VQAEKMVDYALEMADVNDDMRVLDLFCGVGTFSLPFAKRSKELAGIEIVETSIESAKRNA
KDNGLDNTFFMASDARRGMKELPEIWGQPDLLLLDPPRSGAGGKVMRSIGRLGTDKVVYV
SCNPKSLAEDLVWLRDFGYELKTVQPIDQFPHTPHVECVVLMSRVDK
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaggcgattacccaacagaagtgttggatgtagaaatcgattatgtagattca
aaagggcgcggattcgttcactatacccatgcaccagatagaggctcaaacggtagaacg
ttaaaaatcataacgtcgaatgtggttccaggtgatgtggttcgagtaacagttgataat
gcgaaaggtcgttacaaggcagttgttccctatgataagttattgaaacccggtccaaca
cgtaatttagatatgccaactcactttgatgtgtcaggtgcagcgccactgcaatatatg
aaataccctgatcaattggagtttaaagcgaatattgtcaaagaatctttagagcaggct
ggctttgatacagcgttaatccaaccaattattggtatggatgagccaaaccgttaccgt
aataagatggaattatctttcggaccaaccggtgaattaggtatgcaccaacaaggaaat
taccgtaaagtcattgatttaaatgattcagttattgctccaaaggtgatgattgaagta
aagcacattgtgagtcaatggcagaaagataatgatttcaaaggctatgataaagataaa
catacaggacttttacgtaacctaatgatgcgaacttcttttgaaacgggcgaattaatg
gtcgttgtctatgcgacagaaaaacccgaagcacatccagaagctgtaaaagacttaaca
gaccgcttaagcgaagctttcccaagcttagccagtctagtttggattgagtatacaaat
atctctgggcgtattcaatcagaagagtcctttactttatatgggcgcgattatatctat
gacgaattaggtggttaccgctaccggatctggcatgatacattcttccaaccgaaccca
gttcaagctgagaaaatggtggactatgcccttgagatggctgatgtgaatgatgatatg
cgcgtccttgacctattctgtggggtaggaacattcagtttaccttttgcgaaacgcagt
aaagaattagctggaattgaaattgttgaaacttcaattgagtcagcgaagcgtaatgcg
aaagataatggcttagacaatactttcttcatggcgagtgacgctcgacgcggaatgaaa
gaactcccagaaatttggggccaaccagacttattactgttagatccaccaagaagtggt
gccggcgggaaagtgatgcgaagcattggaagacttggaacggataaagttgtctatgtc
tcatgtaatccaaaaagcttagctgaagacttagtttggttaagagactttggttatgaa
ttgaagacggttcaaccgattgaccagtttccgcatacaccgcatgtggagtgtgtagta
ttgatgtcaagggtcgataagtaa
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