Ruoffia tabacinasalis: VQP54_11470
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Entry
VQP54_11470 CDS
T10899
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rtf Ruoffia tabacinasalis
Pathway
rtf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VQP54_11470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtf03019
]
VQP54_11470
Messenger RNA biogenesis [BR:
rtf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VQP54_11470
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
WWL40299
LinkDB
All DBs
Position
complement(2290900..2292609)
Genome browser
AA seq
569 aa
AA seq
DB search
MAVNLRNNEVGVFAIGGLGEIGKNMYGVQFQDEIVILDCGILFPEDELLGIDYVINDFQY
ILENRHKVKGLFISHGHLDHIGGIPYLLKQLNVPIYADPLAAALIRDKLQENGLLRDAEI
TEYNEDTVVNFRKLSISFYRTVHSIPEAYGIVVKTPEGNIVFTGDYKFDFTPVGEPADIH
RMAEIGSEGVLLLLGDSTNAEIPTFTLSERVVGQSIHNIIQGVEGRVIFATFASNVSRLQ
QIVETAIKTNRKIAVFGRSMENSIKTGIELGYIDDYGLDIFVDNRQLDQYPAEEMIIVCT
GSQGEPMAALSRIANGTHRQISIQHNDTVIFSSSPIPGNTLSVNRVINQLVETGANVIHG
KVNNIHTSGHGSQQEQLLMLRLMKPKFFMPVHGEYRMLSIQAKLAELTGIDRENTFIMKN
GDMLALTKNSARRAGFFNAQDVYVDGSGIGDVGNIVLRDRKTLSEDGLVIVTATIDYENK
QLISGPDIMSRGFIYMRESVDLIQEIQQAMKSAINRGLNENGNNVNEKLIRDIIFDQIKP
ILFERTQRSPMILPVLLDVNKGVRKRSSK
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggcagtaaatcttagaaacaatgaagtcggagtattcgccattggtggactaggcgaa
attgggaaaaacatgtatggtgtccaattccaagacgaaattgttattttagactgcgga
attctcttcccggaagatgaattattaggaattgactacgtaattaatgattttcaatat
atcttagaaaatcgtcataaagttaaagggctttttatcagtcatgggcatttagaccat
attggtggaattccatatctattaaaacaactcaatgtgccaatctatgctgaccctctt
gcagccgcattaattcgcgacaaactgcaagaaaatggcttattacgtgatgcggaaatt
acagaatataatgaagatacagtcgttaacttccgtaaattgtcaattagcttttacaga
accgttcactcgattcctgaagcatatggtattgttgtaaaaacacctgaaggaaatatt
gtctttacaggggattataaatttgactttacacctgtaggagagcctgctgatattcac
cgtatggctgaaattggtagcgaaggcgttctactcctattaggtgatagtacaaatgca
gaaattccgactttcaccctttcagaacgggttgtgggtcaatcgattcataatattatc
caaggtgttgaggggcgtgttatctttgcgactttcgcatcgaatgtgtcacgtcttcaa
caaattgttgaaacagcgattaaaacaaatcgtaaaattgcagtcttcggacgtagtatg
gaaaactcaattaaaactgggattgaacttggttatattgatgattatggcttagatatc
tttgttgataatcgtcaactagatcaatatccagcagaagaaatgattatcgtatgtacg
ggttctcaaggtgaacctatggctgctttaagccgaattgcgaacgggacacaccgtcaa
atttcaattcaacataatgatacagtcatcttctcaagttcaccgattcctggaaacact
ttaagtgtgaatcgtgtcattaaccaattagttgagactggtgccaacgtcatccatggt
aaagtgaataacattcatacatcgggacatggtagccaacaagagcaattgttaatgtta
cgtttaatgaagcctaaattcttcatgccagtccatggtgaataccgtatgttaagtatc
caagcaaaactggctgaattaactgggattgaccgtgagaacacattcattatgaaaaac
ggtgacatgcttgctttaactaagaatagcgcaagacgagctggcttctttaatgcccaa
gacgtctatgtggacggaagtggtattggagatgtcggaaacattgtcttacgagatcgt
aaaacactttcggaagatggtttagttattgttacagcaacgattgattacgaaaacaaa
caactcattagtggtccagatattatgtcacgtggctttatctatatgagagaatcggtt
gatttaattcaagagattcaacaagctatgaaatctgcaattaaccgtggtttaaatgaa
aacggaaataacgttaacgaaaaattaattcgtgatattatctttgatcaaatcaaaccg
atcttatttgaacgtactcaacgttctcctatgattttaccggttttattagatgttaat
aaaggtgttcgtaaacgcagtagcaaataa
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