Raoultella terrigena: NCTC13098_00610
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Entry
NCTC13098_00610 CDS
T06046
Symbol
csrD
Name
(GenBank) Regulator of CsrB and CsrC decay CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
rtg
Raoultella terrigena
Brite
KEGG Orthology (KO) [BR:
rtg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtg03019
]
NCTC13098_00610 (csrD)
Messenger RNA biogenesis [BR:
rtg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC13098_00610 (csrD)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GDPD
DUF418
Motif
Other DBs
NCBI-ProteinID:
VDR24324
UniProt:
A0A3P8IQ51
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All DBs
Position
1:509402..511342
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTSLTIFVTLIGASLSFYNGIEQKMENRVQAVATVLDNRLISSSFAR
LEPQMDELMTPVDVVQVDFLLNGKSVYSHSRSDSYRPLGSNNQFREITVPSLKHPGMTLH
LVYLDPMVNYFRSLHMTAPLSIAIGFMVLVIFFSVRWIRRQLSGQELLELRATRILNGER
GPQVRGSVHEWPVSTSSALDMLLSELQFASDQRSRMDTLIRSYAAQDTKTGLNNRLFFDN
QLATLLEDQEKVGSYGIVMMIRLPEFDLLRDNWGRAAAEEHYFTLINLLSTFIMRYPGAL
LARYHRSDFAVLLPHRTLKEADSIAGLLLKAMDALPPTRILDRDDMMHIGICAFRGGQTT
AQVMERAEAATRNAVLQGSNSWAVYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
NRDGRVHHRELMSRLYDGTEEVIAAEYMPMVQQFGLAEEYDRLQITRLLPFLGFWPDENL
ALQVTVESLIRPRFQRWLRDTLMQCEKSQRQRIIFELAEADVCQYIGRLQPVMRLVNALG
IRVAVVQAGLTLVGTSWIKQLDVEVIKLHPGLSRNIEKRSENQLLVQSLVEACKGMPVRV
FATGVRSRSEWQVLSQCGVTGGQGEFFAASQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattctcagcatttgtcacgctgcttaccagcctgactatcttt
gtcacgcttattggcgcgtcgctgagtttttataacggtattgagcaaaaaatggagaat
cgcgtccaggccgtagcgacggtgctggataaccgcctgatctcttcatcctttgcccgg
cttgaaccgcagatggatgaactgatgacgccggtcgacgttgtgcaggttgattttctc
cttaacggcaaatcggtgtacagccactcgcgtagcgacagctaccgcccgctggggagt
aataaccagtttcgggagatcacggtcccgtcgctaaagcaccccgggatgacgctgcat
ctggtctatctggacccgatggttaactacttccgctcgctgcacatgaccgcaccgctt
tccatcgccattggctttatggtgctggtgatctttttttccgttcgctggatccgtcgt
cagctgtcagggcaggagctgctggagctgcgggcgacgaggatccttaacggcgagcgc
gggcctcaggtgcggggatcggtgcacgagtggccggtgagcaccagcagcgcgctggat
atgctgctatccgagctgcagtttgccagcgatcagcgaagccgtatggatacgcttatt
cgctcctatgccgctcaggacaccaaaaccggcctcaataatcgcctgttcttcgataac
cagctcgccacgctgctggaagatcaggaaaaggtcggctcgtacggcattgtgatgatg
atccgcctgccggagttcgacttgctgcgcgataactgggggcgcgccgcagcggaggag
cattacttcacgctcatcaacctgctttctacttttattatgcgctatcccggcgcgctg
ctggcgcgttatcaccgcagcgattttgccgtcctgctgccgcaccgcactctgaaggag
gcggacagcatcgccgggctgctgctgaaggcgatggacgcgctgccgcccacgcgcatt
cttgaccgcgatgacatgatgcatatcggtatttgtgccttccgcggcggacagaccacg
gctcaggtgatggagcgcgcggaagcggcaacgcgcaacgcggtcctgcagggaagcaat
agctgggcggtttatgacgattcgctgccggagaaagggcgcggcaacgtgcgctggcgt
accctgattgaacagatgctaagccgcggcggaccgcggctctatcagaagcccgcggtg
aatcgcgacggtcgcgtccatcaccgtgagctgatgtcccgcctgtatgacggtacggaa
gaggtgattgcggcggaatatatgccgatggtgcagcagtttggcctggcggaagagtat
gaccgcctgcagatcacgcggctgctgccatttttaggcttctggccggacgaaaacctc
gctttacaggtgacggtggagtcgctgatccgtcctcgattccagcgctggctgcgcgat
actttgatgcagtgtgaaaaatcgcaacgtcagcgcattatttttgaacttgcagaggca
gatgtttgtcaatatatcggccgcctgcagccggttatgcggctggttaacgctttaggt
attcgagtcgccgtggttcaggccggattaacgctggttggaaccagctggatcaagcag
ttggacgtcgaagtcatcaagctacacccgggactgtcgcgcaatattgaaaaacgcagt
gagaaccagctgctggttcagagcctggtggaggcctgcaagggtatgccggtccgggtt
tttgcaaccggagtacgcagtcgtagcgagtggcaggtcctgtctcaatgcggtgttacc
ggtggccagggggaattttttgccgcctcacagccacttgacacaaatgtgaaaaaatat
tcgcaaagatactcggtttga
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