Raoultella terrigena: NCTC13098_00722
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Entry
NCTC13098_00722 CDS
T06046
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rtg
Raoultella terrigena
Pathway
rtg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13098_00722 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtg03019
]
NCTC13098_00722 (deaD)
03009 Ribosome biogenesis [BR:
rtg03009
]
NCTC13098_00722 (deaD)
Enzymes [BR:
rtg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13098_00722 (deaD)
Messenger RNA biogenesis [BR:
rtg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13098_00722 (deaD)
Ribosome biogenesis [BR:
rtg03009
]
Prokaryotic type
rRNA helicases
NCTC13098_00722 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
VDR24429
UniProt:
A0A3P8IQG5
LinkDB
All DBs
Position
1:599384..601393
Genome browser
AA seq
669 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQSLREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLTNIKPSAEGEELD
IETLAAALLKMAQGERPLILPPDAPMRAKREFRDRDDRFERRNDRNDRNDRGPRGDRPER
SGEDRPKRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHST
IELPKGMPGEVLQHFTRTRILNKPMNMQLMGDAQPRPERSGGERRGGGERREGGRAFGGE
RREGGRGFGGERREGGRGDGRRFSGERREGQAPRREGHAPRRDDSAPRREDSAPRRDDSS
SRRRFGGDA
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccgatccaggctgaatgcattccgcatctg
ctgggcggccgcgatgttctgggtatggcccagacgggtagcggtaaaaccgcagcgttc
tctttaccgctgctgaacaatcttgatcctgagctcaaagcaccgcaaatcctggtgctg
gcgccgacccgcgaactggcggtacaggttgctgaagcgatgacggacttctctaaacat
atgcgcggcgtaaacgtggtagccctttacggcggccagcgttatgacgtgcagctgcgt
gctctgcgccagggaccacaaattgttgtcggtaccccgggtcgtctgcttgaccacctg
aagcgcggtactctggatctctctaagctgagcggtctggtgctggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgtagaaacgattatggctcagatcccggaaggt
catcagaccgctctgttctctgccactatgccggaagcgattcgtcgtattacccgccgc
tttatgaaagagccgcaggaagtacgcatccagtccagcgtaactactcgcccggacatc
agccagagctactggactgcttacggcatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctggaa
gtggccgaagcgctggagcgtagcggctataacagcgccgcgctgaacggtgacatgaac
cagtccctgcgtgagcagactctggagcgtctgaaagatggtcgtctggacatcctgatt
gcgaccgacgttgcggcccgtggccttgacgttgaacgtatcagcctggttgttaactac
gacatcccgatggactccgaatcttacgttcaccgtatcggccgtaccggtcgtgcaggt
cgtgcaggccgtgcgctgctgttcgttgagaaccgcgaacgccgtctgctgcgtaacatc
gaacgcaccatgaagctgaccattccggaagtagagctgccgaacgcagagctgctgggc
aaacgccgtctggaaaaattcgccgctaaagttcagcagcagctggaaagcagcgatctg
gatcagtaccgtgcgctgctgacgaacatcaagccgtccgctgaaggcgaagagctggat
atcgaaactctggccgcagcactgctgaaaatggctcagggcgaacgtcctctgatcctg
ccgccggatgcaccgatgcgtgctaaacgcgaattccgcgatcgcgacgatcgtttcgaa
cgtcgtaatgaccgtaacgatcgcaatgaccgtggcccgcgtggcgaccgtcctgagcgt
agcggtgaagatcgtcctaaacgcgagcgtcgtgacgttggcgatatggaactgtatcgc
attgaagtgggtcgcgacgatggtgttgaagttcgtcacattgttggcgctatcgctaac
gaaggcgacatcagcagccgttacatcggtaacatcaagctgttcggtacccactcaacg
atcgagctgccgaaaggcatgccgggcgaagtgctgcagcactttactcgtacccgtatc
ctgaacaagccgatgaacatgcagctgatgggcgatgcccagccgcgccctgagcgtagc
ggtggcgagcgtcgtggcggcggtgaacgtcgtgaaggcggccgtgctttcggtggcgag
cgtcgtgaaggcggtcgtggtttcggcggtgaacgtcgcgaaggcggtcgtggtgatggt
cgtcgtttcagcggcgaacgtcgtgaaggccaggctcctcgtcgtgagggtcatgctccg
cgccgtgatgattcagcgccgcgtcgcgaagattccgccccgcgtcgggatgactcttca
agccgtcgtcgtttcggtggcgatgcgtaa
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