Raoultella terrigena: NCTC13098_01298
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Entry
NCTC13098_01298 CDS
T06046
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rtg
Raoultella terrigena
Pathway
rtg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC13098_01298 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtg03400
]
NCTC13098_01298 (recD)
Enzymes [BR:
rtg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC13098_01298 (recD)
DNA repair and recombination proteins [BR:
rtg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC13098_01298 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
Helicase_RecD
UvrD_C_2
Viral_helicase1
SH3_13
AAA_11
AAA_22
UvrD-helicase
SLFN-g3_helicase
nSTAND3
AAA_16
UvrD_C
AAA_28
MukB
T2SSE
ATPase
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
VDR24997
UniProt:
A0A3P8JNW6
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All DBs
Position
1:1083806..1085644
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AA seq
612 aa
AA seq
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MTMDELLLEAANQRLLRPLDVQFALMVARDAHPAVRLAAAVLSRDAGEGHVCLPLSRLAA
DDVLSGKVAALREQLLAQAGAPDDWSALLLSSAAVSRGERPTPMILCGERLYLNRMWRNE
LTVARFFNEANQVLSVDETRLASTLDALFPAGDDIDWQKVAAAVALTRRISVISGGPGTG
KTTTVARLLAGLIQTTDSPRCRIRLAAPTGKAAARLTESLGSALRQLPLTDEQKALLPTE
ASTLHRLLGAQPGSQRMRYHAGNPLHLDVLVVDEASMIDLPMMARLIDALPAHGRVIFLG
DRDQLASVEAGAVLGDICAWVSAGYTAERAAQLKRLTGLPVPAGEGEAAGALRDSLCLLQ
KSYRFGSHSGIGSLARAVNAGDRHGVKTTLRQPFDDIVLRPLSTTEEYEAMLTQAQAGYD
RYLRLLRERADPEAAIAAFGEFRLLCALREGPYGVSGLNEQLELMLNRKRAIALPRHSRW
YEGRPVMISRNDSALGLFNGDIGIALERGDGLRVWFPMPDGSIKSVQPSRLPDHDTAWAM
TVHKSQGSEFDHAALILPSRSVPLVTRELVYTAITRAKRQLSIYADEQVLTQAIAARTER
RSGLADIFASGG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaccatggatgagctgctgcttgaggcagcaaaccagcgtttgttacgtccgcttgac
gtccagtttgcgctgatggtcgccagggatgcgcacccggcggtgaggctggcggcggcg
gtgttgagccgcgacgccggcgaaggacacgtctgcctgccgctctcgcgccttgccgct
gacgacgtgctgagcgggaaggtcgccgctctgcgcgagcagctgctggcgcaggccggc
gcgcccgatgactggtcggcgctgctgctctcttcggcggcggttagccgcggggagcgc
ccgacgccaatgatcctctgcggcgaacggctttaccttaaccgcatgtggcgcaacgag
ctgaccgtcgcgcgcttttttaacgaagccaaccaggtgctgagcgtggatgaaacgcgc
ctggcgtcgacgctggatgcgctcttcccggccggggacgatattgactggcagaaggtg
gcggcggcggtggcgctgacccggcggatttcggttatttccggcggtccaggcaccggt
aaaacgactaccgtcgccaggctgctggcggggttgatccagacgacggattcgccccgc
tgccgcatccgcctggcggcgcccaccggcaaagcagccgcgcgcctgaccgagtcgctg
ggcagcgcgctgcgccagctgccgctgacggatgagcagaaggcgctgctgccgacggag
gccagcaccctgcaccgcctgctgggcgcccagccgggtagccagcgtatgcgctatcac
gccggtaacccgctgcacctcgacgtgctggtggtggatgaagcctcgatgattgacctg
ccgatgatggctcgcctgattgacgccctgccggcgcacggtcgggtgatttttctcggc
gaccgcgatcagctggcgtcggtggaggccggcgcggtgctgggagatatttgcgcctgg
gtgagtgcgggctataccgccgagcgcgcggcgcagctaaagcggctgaccggcctgccg
gtgcctgccggcgagggcgaggcggcgggcgccctgcgcgacagcctgtgcctgctgcaa
aaaagctatcgttttggcagccactccggtatcggtagcctggcccgggcggtgaacgcc
ggcgatcggcacggggttaaaacgaccctgcgtcagccgttcgacgacatcgttctgcgc
ccgctaagcaccaccgaggagtatgaggcgatgctgacgcaggcgcaggccggctacgat
cgctatctccggctgctgcgcgagcgggcggatccggaggcggcgatcgccgctttcggc
gagttccggctactgtgcgccctgcgcgagggtccctacggcgtcagcgggctgaacgaa
cagctggagctgatgctcaatcgtaagcgggctattgcgctgccgcggcattcgcgctgg
tatgaaggccggccggtgatgatctcgcgcaacgatagcgcgctggggctgtttaacggt
gatattggcattgcgctggaaaggggagacgggcttcgcgtctggttcccgatgccggat
ggcagcattaagtcggtgcagcccagccgcctgccggatcacgataccgcctgggcgatg
acggtgcataaatctcagggctcggagtttgaccacgcggccctgattttgccttcccgc
agcgtgccgctggtgacgcgtgagctggtgtataccgcgataacccgcgccaaacggcag
ctgtcgatttatgccgatgagcaggtgctgactcaggctattgcggcgcgcaccgaacgg
cgcagcgggctggcggatatcttcgccagcggcgggtag
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