Raoultella terrigena: NCTC13098_04127
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Entry
NCTC13098_04127 CDS
T06046
Symbol
rnb_1
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rtg
Raoultella terrigena
Brite
KEGG Orthology (KO) [BR:
rtg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rtg03016
]
NCTC13098_04127 (rnb_1)
Enzymes [BR:
rtg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC13098_04127 (rnb_1)
Transfer RNA biogenesis [BR:
rtg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC13098_04127 (rnb_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
OSR1_C
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
VDR27755
UniProt:
A0A3P8KFH5
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All DBs
Position
1:3424725..3426563
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AA seq
612 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDSQKSYFIPPPQMKKVMHGDRI
TAVVHTEKERESAEPEELIEPFLTRFVGKVHKKDDRLSIVPDHPLLKDAVPCRADRSVSH
DFSEGDWAVAEMRRHPLKGDRGFYAELTQFITFSDDHFVPWWVTLARHNLEKEAPDGVAT
EMLDEGLERRDLTALAFVTIDSASTQDMDDALYVEAAADGKLHLTVAIADPTAWIAEGSK
LDDAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANETRPVLACRMILSADGTIEDDIEF
FAATIESKAKLAYDNVSDWLENSGSWQPESEAIAQQITLLQDLCLRRSEWRKTHALVFKD
RPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDRLGFGVYNVHTGFD
PANTEQLAALLKTHDVHVDPQEVLTLNGFCKLRRELDAQPSGFLDSRIRRFQSYAEISTE
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAIIKGETIARPNDDVAVQMAERRRLNRM
AERDVGDWLYARYLSPNAGTDTRFAAEIIDISRGGMRVRVVDNGAVAFIPAPFLHAVRDE
LVCSQGKRHRAD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggacaacccgctgctagcgcagcttaaacagcaactgcattctcagactcct
cgcgttgaaggggtcgttaagggtacggaaaaaggctttggcttcctcgaagttgactcg
cagaaaagctatttcattccgccgccgcaaatgaaaaaagtgatgcatggcgatcgtatt
accgccgtggtccatactgaaaaagaacgtgaaagcgcggagccggaagagttgatcgag
cctttcctgacgcgtttcgttggtaaagtgcataagaaagacgatcgcctgtctatcgtt
cccgatcatccgctgctgaaagatgccgttccgtgccgcgccgatcgcagcgtcagccac
gattttagcgagggtgactgggcggttgccgaaatgcgccgtcatccgctgaaaggcgat
cgcggcttctatgccgaattaacccagttcatcaccttcagcgacgaccacttcgtaccg
tggtgggttaccctggcgcgccataatctggagaaagaagcgccagacggcgtggctacc
gagatgctggacgaagggctggagcgccgcgacctgacggcgctggcgttcgtgaccatc
gatagcgccagcacccaggatatggacgatgcgctgtatgtggaagccgccgctgacggc
aagctgcacctgaccgtggcgatcgccgacccgaccgcctggatcgccgaaggcagtaag
ctggacgacgcggcaaaaattcgcgccttcaccaactacctgccgggctttaacatcccg
atgctgccgcgcgagctctccgacgacctgtgctcgctgcgcgccaacgagacgcgcccg
gtgctggcctgccgtatgatcctctcggccgacggtacgattgaagacgatattgaattc
ttcgccgccaccattgagtcgaaagcgaagctggcctacgacaacgtctccgactggctg
gaaaatagcggcagctggcagcccgaaagcgaagccatcgcgcagcagattaccctgctg
caggacctgtgcctgcgccgcagcgaatggcgtaaaacccatgcgctggtgtttaaggac
cgtccggactaccgcttcgtgctgggtgagaaaggtgaagtgctggatatcgttgccgag
ccgcgccgtatcgccaaccgcatcgttgaagagtcgatgattgccgccaacatctgcgcc
gctcgcgtgctgcgcgaccgcctgggctttggcgtttacaacgtgcataccggcttcgat
ccggcaaatactgaacagctggccgcgctgctgaagacccatgacgtgcacgtcgatccg
caggaagtgctgacccttaacggcttctgcaagctgcgccgcgaactggacgcacagccg
tccggcttcctcgatagccgcatccgtcgcttccagtcctacgccgaaatcagcaccgag
ccgggcccgcacttcggcctaggcctcgaagcctacgccacctggacctcaccgattcgt
aagtacggcgatatgattaaccatcgcctgctgaaagccatcattaaaggtgaaaccatc
gcgcgccctaacgatgacgtagcggtgcagatggcagagcgccgtcgtctgaaccggatg
gccgaacgcgacgtcggcgactggctgtacgcgcgttacctgagcccgaacgccggcacc
gatacgcgctttgcggcggaaattatcgatatcagccgcggcggcatgcgcgtgcgcgtg
gttgataacggcgcggtcgcctttatcccggcaccgttcctgcacgccgtccgcgatgag
ctggtctgcagccagggaaaacggcaccgtgcagattaa
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