Raoultella terrigena: NCTC13098_04143
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Entry
NCTC13098_04143 CDS
T06046
Symbol
topA_2
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rtg
Raoultella terrigena
Brite
KEGG Orthology (KO) [BR:
rtg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtg03032
]
NCTC13098_04143 (topA_2)
03400 DNA repair and recombination proteins [BR:
rtg03400
]
NCTC13098_04143 (topA_2)
Enzymes [BR:
rtg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NCTC13098_04143 (topA_2)
DNA replication proteins [BR:
rtg03032
]
Prokaryotic type
DNA Topoisomerases
NCTC13098_04143 (topA_2)
DNA repair and recombination proteins [BR:
rtg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCTC13098_04143 (topA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF1722
LRV_FeS
Motif
Other DBs
NCBI-ProteinID:
VDR27771
UniProt:
A0A3P8KM05
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All DBs
Position
1:complement(3438937..3441534)
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AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKSADSTATKGAKKPK
KDERSALVNRMGVDPWHDWDAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDEKRYSRVVFNEITKNAIRQAFDKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDASTTTPGGDALALQVTH
KNDKPFRPVNRDETMSAVALLEKSGYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDALSMVRGYIGDNFGKKYLPENANQYASKEN
SQEAHEAIRPSDVNVMAEDLKGMESDALKLYQLIWRQFVACQMTPAQYDSTTLTVKAGDF
KLKARGRTLRFDGWTKVMPALRKGDEDRVLPVVNQGDSLSLVELSPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRDLMNY
DFTAQMEDRLDQVANHQAEWRQVLDHFFGDFTAQLETAEKDPEEGGMQPNPMVLTSIDCP
TCGREMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPVVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAWFVLRDGAAGVF
LAANTFPKSRETRAPLVEELYRFRDRLAEKLRYLADAPQQDPEGNKTLVRFSRKTKQQYV
ASEKDGKATGWSAFYIDGKWTEAKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgttgagtccccggcaaaagccaaaacgatcaataagtat
ctgggtaatgactacgtggttaagtccagcgtcggtcatatccgcgatttgccgaccagt
ggctcagcttccaaaaagagcgccgactctaccgccaccaaaggggccaaaaagcctaaa
aaggacgaacgtagcgctctggtcaatcgcatgggcgtcgacccgtggcatgactgggat
gcgcactatgaagtactcccgggtaaagaaaaggtagtttcagaactcaagcagttggct
gaaaaagccgaccatatctatctcgcaactgaccttgaccgcgaaggggaagccattgca
tggcacctgcgggaagttatcggtggtgatgaaaaacgctacagccgcgttgtatttaac
gaaattactaaaaacgcgatccgtcaggcttttgacaagccgggcgaactgaacatcgat
cgcgttaatgcccagcaggcgcgccgctttatggaccgcgtagtgggctatatggtttct
ccgctgctgtggaaaaaaatagcgcgtggcctctccgcgggccgcgttcagtccgttgcc
gtccgcctggtggtcgaacgcgaacgcgaaattaaagccttcgtcccggaagagttctgg
gagattgacgccagcaccacgacgcctggtggagacgctttagcgctgcaggtcacgcac
aagaacgacaagccgttccgtccggttaaccgcgatgagaccatgtctgccgtcgcgctg
ctggagaaatccggctacagcgtgctggaacgcgaagataagccgaccagcagcaaaccg
ggcgcgccgttcatcacctcaaccttgcagcaggcggccagcacgcgtctgggcttcggg
gtgaagaaaaccatgatgatggcgcagcgtctgtatgaggccggctacatcacctatatg
cgtaccgactccaccaacctgagtcaggatgcgctgagcatggtgcgcggctacattggc
gataactttggcaaaaagtatctgccggagaacgccaaccagtacgccagcaaagaaaac
tcgcaggaagcgcacgaagcgattcgtccttccgatgtgaacgtgatggcggaagattta
aaaggtatggaatctgatgcgctgaagctctatcagctgatctggcgccagtttgtcgcc
tgtcagatgacgccagcgcagtacgactcgaccaccctaacggtgaaagccggcgacttt
aagctcaaggcgcgcggccgtacgctgcgttttgacggctggacgaaagtcatgcctgcg
ctgcgcaagggcgatgaagaccgcgtcctgccggtggttaatcagggcgacagcttaagc
ctggttgaacttagcccggcgcagcactttaccaaaccgcctgcgcgctttagcgaagca
tcgctggttaaagagctggaaaaacgcggcatcggccgtccgtcaacctatgcgtcgatc
atttcgacaattcaggatcgcggctacgttcgggtagagaaccgtcgcttctatgcggaa
aaaatgggtgagatcgtcaccgaccgtctggaagagaacttccgcgatctgatgaactac
gactttaccgcgcagatggaagaccgtctcgaccaggtggcgaatcatcaggccgagtgg
cggcaggtgctggatcacttcttcggtgactttaccgctcagctggaaacggcggagaag
gatccggaagagggcggcatgcagcctaacccgatggtgctgaccagcatcgactgtccg
acctgcggtcgtgagatgggcattcgtaccgccagcaccggggtgttcctcggctgctcc
ggctacgcgctgccgccgaaagagcgctgcaaaaccaccattaacctggtgccggaaaac
gaagtgctcaacgtgctggaaggcgacgatgccgaaaccaacgcgctgcgcgccaagcgt
cgctgccagaagtgcggcacggcgatggacagctaccttatcgatcctaagcgtaagctg
catgtctgcggtaacaacccgacctgcgacggctacgagattgaagagggcgagttccgc
attaagggctacgatggcccggtagttgagtgtgagaaatgtggttctgagatgcacctg
aaaatggggcgtttcggtaagtacatggcctgcaccaacgacgaatgtaagaatacgcgc
aaaattctgcgtaacggggaagtggcgccgccgaaggaagatccggttccgctgccggag
ctgccgtgcgagaaatcggacgcctggtttgttctgcgtgacggtgcagccggcgtgttc
ctcgcggcaaacaccttcccgaaatcccgcgaaacgcgcgcgccgctggttgaggagctg
taccgcttccgtgaccgcctcgccgagaagctgcgttatctcgccgatgcgccgcagcag
gatccggaaggcaataaaacgctggtgcgttttagccgtaaaaccaagcagcagtacgtt
gcgtcggaaaaagatggcaaagcgaccggctggtcagccttctacatcgacggcaagtgg
actgaagcgaaaaagtaa
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