Raoultella terrigena: NCTC13098_05202
Help
Entry
NCTC13098_05202 CDS
T06046
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase rhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rtg
Raoultella terrigena
Pathway
rtg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13098_05202 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtg03019
]
NCTC13098_05202 (rhlE)
Enzymes [BR:
rtg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13098_05202 (rhlE)
Messenger RNA biogenesis [BR:
rtg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13098_05202 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
AAA_22
P-loop_SecA
Cullin_binding
Motif
Other DBs
NCBI-ProteinID:
VDR28815
UniProt:
A0A3P8KHU2
LinkDB
All DBs
Position
1:complement(4324154..4325524)
Genome browser
AA seq
456 aa
AA seq
DB search
MSFDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL
QHLIQQEPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNVRSLVVFGGVSINPQMM
KLRSGVDILVATPGRLLDLEHQNAVSLDKVEVLVLDEADRMLDMGFIHDIRRVLSKLPAK
RQNLLFSATFSDEIKSLAEKLLHNPLEIEVARRNTASEQVSQYVHFVDKKRKRELLSQMI
GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLHDI
ERLLKKEIPRISVAGYEPDPSIRAEPIQNGRQQRSGGGGGRGQGQGRGGQSQGRGGQSQG
RGQPSSPRRSDGDAPKARTQDGKPQRRRSRKPAAAE
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcccttggccttaatcctgaaatcctgcgcgccgtagccgaacagggt
tatgttgagccaacccccattcagcagcaggctatccctgcggtgttgcaggggcgcgat
ctgatggccagcgcccagaccggcaccggcaaaacggcgggctttaccctgccgctgctt
cagcatctgatccagcaagagccgcacgcgaagggccgtcgcccggtgcgcgcgctgatc
ctcacccccacgcgtgagctggccgctcagattggcgaaaacgttcgtgattacagcaag
tatctgaacgttcgctcgctggtggtattcggcggcgtgagcattaacccgcagatgatg
aagctgcgcagcggcgtcgatatcctggtggcaacgccgggtcgcctgctggatctggaa
caccagaacgccgttagcctggataaggtcgaagtgctggtgctggatgaagccgaccgc
atgctggacatgggctttatccatgatattcgccgcgtgctgtcgaagctgccggcgaag
cgccagaacctgctgttctcggccaccttctccgacgagattaaatcgctggcggaaaag
ctgctgcataacccgctggaaatcgaagtcgcccgtcgcaacacggcctccgagcaggtc
agccagtacgtgcatttcgttgataagaagcgcaagcgcgagctgctgtcgcagatgatc
ggcgaaggcaactggcagcaggtgctggtctttacccgtaccaagcatggcgccaaccac
ctggcggagcagctgaacaaagacggcattcgcagcgccgctatccacggcaacaaaagc
cagggcgcgcgtactcgcgcattagctgattttaaatccggcggcattcgcgtgctggta
gcgaccgacatcgccgcgcgcggcctggatatcgaagagctgccgcacgtggtgaactac
gagctgccgaacgtgccggaagattatgtccaccgtattggccgtaccggccgcgccgcc
gctaccggcgaagcgctgtcgctggtctgcgttgatgaacataagctgctgcacgatatc
gaacgcctgctgaaaaaagagatcccacgcattagcgttgccggctatgagccggatccg
tccatccgagcggaaccgattcaaaacggtcgtcagcagcgcagcggcggcggcggtggt
cgcggtcagggccagggacgcggcggccagagtcagggtcgcggcggtcagagccagggg
cgtggtcagccgtcttcaccgcgccgcagcgacggtgatgcgccgaaagcgcgcactcag
gacggcaaaccgcagcgtcgtcgctcgcgcaagccggcggccgctgagtaa
DBGET
integrated database retrieval system
