Raoultella terrigena: NCTC13098_06064
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Entry
NCTC13098_06064 CDS
T06046
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rtg
Raoultella terrigena
Pathway
rtg03030
DNA replication
rtg03430
Mismatch repair
rtg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC13098_06064 (dnaE)
03430 Mismatch repair
NCTC13098_06064 (dnaE)
03440 Homologous recombination
NCTC13098_06064 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtg03032
]
NCTC13098_06064 (dnaE)
03400 DNA repair and recombination proteins [BR:
rtg03400
]
NCTC13098_06064 (dnaE)
Enzymes [BR:
rtg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC13098_06064 (dnaE)
DNA replication proteins [BR:
rtg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC13098_06064 (dnaE)
DNA repair and recombination proteins [BR:
rtg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC13098_06064 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
VDR29646
UniProt:
A0A3P8M4H5
LinkDB
All DBs
Position
1:complement(5062967..5066449)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GIKPIVGADFHVQCDLLGDELTEITVLAADNAGYQNLTLLISRAYQRGYGALGPWIDRDW
LVEHQEGLILLSGARKGDVGVCMTRGNAALVEQCVDFYEEHFPNRYYLELIRTGRADEET
YLHAAVQLAEERGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEDEMCELFSDLPEALENSVEIAKRCNVTVRLGEYFLPQFPTGEMTTEDFLVLKSKEGL
EERLEFLFPDEAERKEKRPEYDERLEIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGLHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEEPLDIAAIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKG
VGEGPIEAIIEARNEGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYANCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaccacgtttcgtacacctcagggtgcacagcgactattccatgatcgatggg
ctggcgaaaaccgggccgctggtgaaaaaggcggccgcgttaggcatgccggcgctggcg
atcaccgattttaccaacctgtgcgggctggtgaagttctacggagcgggacacggagcc
gggatcaagccgatcgtcggcgcggattttcacgtccagtgcgatctgctgggcgatgag
ctgaccgaaattaccgtcctggcggccgataacgccggttaccaaaacctcaccctgctg
atttcccgcgcctatcagcgcggttacggcgctctcgggccgtggatcgacagggactgg
ctggttgagcatcaggaagggctgattctgctctccggcgcgcgcaaaggcgacgtcggc
gtgtgcatgacgcgcggcaacgcggcgctggttgaacagtgcgtcgacttctacgaagag
cacttccccaatcgctactatctggagctgatccgcaccggtcgggcggacgaagagacc
tatctgcacgccgccgtccagctggcggaggagcgcgggctgccggtggtagcgacgaac
gacgtgcgcttcctcgagaccggcgacttcgacgcgcatgaaatccgcgtggcgatccat
gacggctttaccctcgacgatccgaagcgcccgcgtaactattcgccgcagcagtatatg
cgcagcgaagatgagatgtgcgagctgttctccgatctccccgaggcgctggaaaatagc
gtagaaattgccaaacgctgtaacgtcaccgtgcgtcttggcgaatacttcctgccgcag
ttcccgaccggcgagatgacgactgaagatttcctggtattgaaatcgaaagagggtctg
gaagagcgcctggaattcttgttccccgacgaagctgagcgtaaagagaagcgcccggaa
tatgatgaacgtctggagatcgagctgcaggttatcaaccagatgggcttccctggctac
ttcctgatcgtaatggaatttatccagtggtcgaaggataacggcgtgcctgttggccca
ggacgaggctccggcgccggctcgctggtggcctacgcgctgaaaattaccgatctcgat
ccgctggagttcgatctgctgttcgaacgcttcctgaacccggagcgcgtgtcgatgccc
gactttgacgtcgacttctgtatggagaagcgcgatcaggttatcgagcacgtcgcggac
atgtacggccgcgatgcggtatcgcagattattacctttggcacgatggcggcaaaagcg
gttatccgcgacgttggccgcgtgctgggccatccgtatggcttcgtcgatcgcatctca
aaactggtgccgccggatccggggatgaccctggcgaaagcctttgaagccgaaccgcag
ctgccggaaatctacgaagctgacgaagaggtcaaggcgcttatcgatatggcgcgcaag
ctggaaggcgtcacgcgtaacgccggtaagcacgccggcggggtagttatcgccccgacc
aaaatcaccgattttgccccgctgtactgcgatgaggccgggctgcatccggtcacccag
tttgataagaacgacgtggaatatgcggggctggtcaagtttgacttcctcggcctgcgt
acgctgacgatcatcaactgggcgctggagatgatcaacaagcggcgcgcgaagaacggc
gaagagccgctggatatcgccgccattccgctggaagataagaaaagttttgatatgctg
cagcgctcggaaaccaccgcggttttccagcttgaatcgcgcggcatgaaagacctgatc
aaacgtctgcagccggactgcttcgaagatatgatcgccctcgtggcgctgttccgtccc
ggtccgctgcaatcagggatggtggataactttatcgaccgtaagcacggccgggaggag
atctcctatccggacgtgcagtggcagcatgagtgtctgaagccggtgctggagccgacc
tacggcattatcctgtaccaggaacaggtcatgcagatcgcgcaggagctttctggctat
acgctcggcggcgcggatatgctgcgtcgtgcgatgggtaagaaaaagccggaggagatg
gccaagcagcgcggcaccttcgaggaaggggcaaagaaaaacggcgttgatggcgagctg
gcgatgaaaatcttcgacctggtggagaaattcgccggttacggatttaacaaatcgcac
tccgctgcctatgcgctggtctcctaccagacgctgtggctgaaggcgcactatccggca
gagtttatggccgcggttatgacggcggatatggacaacaccgagaaggtggttgggctg
gtggatgagtgctggcggatggggctgaaaatcctgccgcctgacattaactccggcctg
taccatttccacgttaatgacgagggtgaaatcgtctacggcattggagccattaaaggc
gtcggcgaaggtccgatcgaagcgattatcgaagcgcgtaacgaaggcggctatttccgc
gagctcttcgacctttgtgcccgtaccgataccaaaaagctcaaccgccgggtgctggaa
aaactgattatgtccggggcgtttgaccgcctcgggccgcatcgcgcggcgctgatgaat
tcgcttggcgacgcgctgaaggctgccgatcagcacgctaaagccgaggccattggccag
gccgacatgttcggcgtgctggcggaagagccggaacaaatcgagcaatcctacgctaac
tgccagccgtggccggagcaggtggtgctcgatggcgaaagggagaccctggggctgtat
ctgaccggtcacccgatcaaccagtatttgaaagagatcgagcgctacgtaggcggcgtc
aggctcaaagacatgcatccgaccgatcgtggtaaagttaccacggcggcggggctcgtt
attgctgcgcgggtaatggtcaccaagcgcggcaatcgtatcggcatctgtactttggat
gaccgttccgggcgtctggaggtgatgttattcaccgacgctctggataaatatcagcaa
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggggggcttaaaatgaccgcccgtgaagtgatggacattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgttcgggaactattccagtgcacctctattatcag
agggcggatgcgcgcgcgcggctgcgcttcggcgcaacatggcgcgtctctccgagcgat
cgtttactcaacgatctgcgtggccttatcggctcggagcaggtggaactggagtttgac
taa
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