Raoultella terrigena: NCTC13098_06945
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Entry
NCTC13098_06945 CDS
T06046
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rtg
Raoultella terrigena
Pathway
rtg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rtg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC13098_06945 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtg03021
]
NCTC13098_06945 (rpoC)
03400 DNA repair and recombination proteins [BR:
rtg03400
]
NCTC13098_06945 (rpoC)
Enzymes [BR:
rtg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC13098_06945 (rpoC)
Transcription machinery [BR:
rtg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC13098_06945 (rpoC)
DNA repair and recombination proteins [BR:
rtg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC13098_06945 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
VDR30497
UniProt:
A0A1V2BDZ1
LinkDB
All DBs
Position
1:complement(5814084..5818307)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENDQFVAKTSLKDTTVGRAILWMIVPKGLPFTIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEHWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSAGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGEQVAGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQISAGDALARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIDSAGSSDFLEGEQVEYSRVKIANRDLEANGKVAATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAAGEQPA
APQVTVEEASANLAELLNAGLGGSDND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgag
cgcatgggccacatcgagctggcgtctccgaccgcccacatttggttcctgaagtcgctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgtgatatcgaacgcgttctgtac
ttcgaatcttatgtggttatcgaaggcgggatgacgaacctcgaacgcaaccagatcctg
acagaagagcagtatctggacgcgctggaagagttcggcgacgagttcgacgcgaagatg
ggcgccgaagctattcaggccctgctgaagagcatggatctggagcaggaatgcgaacag
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgt
atcaaactgctggaagctttcgttcagtctggcaacaagccggagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcgacttctgacctgaacgatttgtatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggatatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggttgacgccctgctggataacggtcgtcgcggtcgtgctatcaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctgggtaaacgcgttgactactccggtcgttctgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccattaaagctgcgaagaaaatg
gttgagcgcgaagaagccgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcatttgagccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtctgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtccccggcgaacggcgagcctatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatacgaaaaagacgaaaac
gaccagttcgtagcgaaaaccagcctgaaagacacgaccgttggccgtgcgattctgtgg
atgatcgtgcctaaaggcctgccgttcactatcgtgaaccaggctctgggtaagaaagcg
atctccaaaatgctgaacacctgctaccgtattctgggcctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
attgatgacatggtcatcccggagaaaaaacacgagatcatcagcgaagcggaagctgaa
gttgctgaaatccaggaacagttccagtccggtctggttaccgcaggcgaacgctacaac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaaccgaaaccgttattaaccgtgacggcgtcgaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gctggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacagcgaactccggttacctgactcgtcgtctg
gttgacgttgcacaggacctggttgttactgaagacgactgtggcaccctggaaggcatc
accatgaccccggttatcgagggtggtgatgttaaagagccgctgcgcgatcgcgtactg
ggtcgtgtgaccgctgaagacgttctgaagccgggtactgcggatattctggttccacgc
aacacgctgctgcacgagcactggtgtgacctgctggaagagaactccgttgactccgtc
aaagtgcgttccgtcgtatcctgtgacaccgactttggtgtatgtgcgcactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaggctatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgtctt
agcaacgctaaatcggttgtcaactctgccggcaagctggtagtgacctcgcgtaacacc
gaactgaagctgatcgacgaattcggtcgtaccaaagagagctataaagttccttacggt
gcggtgatgggtaaaggtgatggtgagcaggttgctggcggcgaaaccgtagcaaactgg
gatccgcacaccatgccggttatcactgaagtaagtggtttcatccgctttactgacatg
attgacggccagaccattactcgtcagaccgacgagctgaccggtctgtcttcgctggtc
gttctggattctgcagagcgtacggcgggtggtaaagacctgcgtccggccctgaaaatc
gttgatgctaacggtaacgacgttctgatccctggcaccgatatgcctgcgcagtacttc
ctgccgggtaaagcgatcgtccagctggaagatggtatccagatcagtgcgggtgacgca
ctggcgcgtattcctcaggaatccagcggtaccaaggatatcaccggtggtctgccgcgc
gttgctgacctgttcgaagcgcgtcgcccgaaagagccggcaattctggcagaaatcagc
ggtatcatctccttcggtaaagaaaccaaaggtaaacgtcgtctggtcatcactccgtta
gacggtagcgatccatacgaagagatgattccgaaatggcgtcagctgaacgtgtttgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgacggtccggaagcgccgcacgacatt
ctgcgtcttcgtggcgtacacgcggtaacgcgttatatcaccaacgaagtacaggacgtt
taccgtctgcaaggcgttaagattaacgataagcacattgaagttatcgttcgtcagatg
ctgcgtaaagcgactatcgacagtgccggtagctccgacttcctggaaggcgagcaggtt
gagtactcccgcgtcaagattgctaaccgcgatctggaagcgaatggcaaagttgcggca
acttactcccgcgacctgctgggtatcaccaaagcgtctctggcaaccgaatcgttcatc
tctgcagcatcgttccaggagactacccgtgtcctgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgtggcctgaaagagaacgttatcgtgggtcgtctgatcccggctggt
accggctatgcgtaccaccaggatcgtatgcgccgcaaggcagctggcgaacagcctgct
gcaccgcaggttaccgtcgaagaagcttctgccaacctggcagagctgctgaacgcgggt
ctgggcggttcagacaacgattaa
DBGET
integrated database retrieval system
