Rhodanobacter thiooxydans: LRK53_00020
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Entry
LRK53_00020 CDS
T08065
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
rth
Rhodanobacter thiooxydans
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rth03032
]
LRK53_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
rth03400
]
LRK53_00020 (gyrB)
Enzymes [BR:
rth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
LRK53_00020 (gyrB)
DNA replication proteins [BR:
rth03032
]
Prokaryotic type
DNA Topoisomerases
LRK53_00020 (gyrB)
DNA repair and recombination proteins [BR:
rth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LRK53_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
Toprim_4
HATPase_c_3
Clostridium_P47
DUF5793
Motif
Other DBs
NCBI-ProteinID:
UJJ54827
LinkDB
All DBs
Position
3948..6380
Genome browser
AA seq
810 aa
AA seq
DB search
MNEPSNESHYDSSNIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY
CDKVAVTILDDGSVSVSDNGRGIPVDMHPEEHRSTAEVVMTVLHAGGKFDANSYKVSGGL
HGVGVSVVNALSDHLWLTIYRDGHEYQQEYALGEPLYPLKEVGPSNKRGTTVRFLPSPAT
FTSNIDFHYEILAKRLRELAFLNSGVTIELKDERGEGRADTFAYEGGIRSFVQHLAQMKT
ALHPNVISLSAEQDGIVVEVAMQWTDSYNEIMFCFTNNIPQRDGGTHLTGFRAALTRSLQ
NYIEKEGLAKNAKVALSGDDMREGMIAVLSVKVPDPKFSSQTKDKLVSSEVKTVVEQVIN
EKLGEFLLEHPNEAKAIASKVVDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKD
PALCELFLVEGDSAGGSAKQGRNRRTQAVLPLKGKILNVEKARFDRMLASAEVGTLITAL
GTGIGKDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIGLPPL
YKVKQGKQELYIKDDAALNDFLISSAVDNAALTYAPDAPPITGEALEKLLRGYQLALDQI
ARLAHRFDAAVLNVLLEHQPITPALWSDPVAMQAWLDGAAQRLAASGLGKPHYRLTLRPA
AGGQPAAIEVVKEQHGLSHTWLLPQPFFASAELRPILAISQQIAGMIQPDAVVRRGNASR
GVLSFLDARNWLLDEAKKGRSIQRFKGLGEMNPEQLWDTTVNPDTRRMLQVGIEDAIAAD
QMFSMLMGEAVEPRRDFIEANALKVANLDI
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacccagcaacgaatcgcactacgactccagcaacatcaaggtgctgaagggc
ctggaagcggtgcgcaagcgcccgggcatgtacatcggcgacaccgatgacggcaccggc
ctgcaccacatggtgttcgaagtggtcgacaactcgatcgacgaggcgctggccggctac
tgcgacaaggtggcggtcaccattctcgacgacggctcggtcagcgtcagcgacaacggc
cgcggtatcccggtcgacatgcacccggaggagcatcgctccaccgccgaggtggtgatg
acggtgctgcatgccggcggcaagttcgacgccaattcgtacaaggtgtccggtggcctg
cacggggtgggcgtttccgtggtgaacgcgctgagcgatcacctgtggctgaccatttat
cgtgacggtcatgagtaccagcaggaatacgcgctcggcgagccactgtacccgctgaag
gaggttgggccgtcgaacaagcgcggtaccacggtgcgcttcctgcccagcccggccacc
ttcaccagcaacatcgacttccactacgagattctggccaaacgtctgcgcgagctggct
ttcctcaactccggcgtcaccatcgagctgaaggacgagcgcggggaagggcgggcggac
acgttcgcctacgagggcggcatccgctcgttcgtgcagcacctggcgcagatgaagacc
gcgctgcacccgaacgtgatcagcctctccgccgaacaggacggcatcgtggtggaagtg
gcgatgcagtggaccgactcgtacaacgagatcatgttctgcttcaccaacaacatcccg
cagcgcgatggcggcacccatctcaccggtttccgcgccgcgctgacccgctcgctgcag
aactacatcgagaaggaaggcctggccaagaacgccaaggtcgcgctgtccggcgacgac
atgcgcgaaggcatgatcgcggtactgtcggtgaaggtgcctgatccgaagttctcctcg
cagaccaaggacaagctggtctcgtccgaggtgaagaccgtggtggagcaggtcatcaac
gagaagctcggcgagttcctgctggaacacccgaacgaggccaaggcgatcgcctcgaag
gtggtcgacgccgctcgtgcccgcgaagccgcccgcaaggcgcgcgagatgacccgccgc
aagggcgcgctggacatcgccggcctgcccggcaagctggccgactgccaggaaaaggac
ccggcgctgtgcgagctgttcctggtcgagggtgattccgccggcggctcggccaagcag
ggccgcaaccgcaggacccaggccgtgctgccgctgaaaggcaagatcctgaacgtggag
aaggcgcgcttcgaccgcatgctggcctcggccgaggtcggcacgctgatcaccgcgctg
ggcaccggcattggcaaggacgagtacaaccccgacaagctgcgctaccaccgcatcatc
ctgatgaccgacgcggacgtcgacggctcgcacatccgcaccctgctgctgaccttcttc
taccgccagatgcccgagctgatcgagcgcggccacatctacatcggcctgccgccgctg
tacaaggtgaagcagggcaagcaggagttgtacatcaaggacgatgccgcgctgaacgac
ttcctgatctccagcgcggtggacaacgctgcgctgacctacgccccggatgcgccgccg
atcaccggcgaggcgctggagaagctgctgcgcggctaccagctcgcgctggaccagatt
gcccggctggcgcatcgtttcgatgccgccgtgctgaacgtgttgctcgagcaccagccg
atcacacccgcgctgtggtccgatccggtggccatgcaagcctggctggatggcgccgcg
cagcggctggcggccagcggcctgggcaagccgcactaccgcctcacgctgcgcccggcc
gctggcgggcagccggccgcgatcgaggtggtgaaggagcagcacggactcagccatacc
tggttgctgccgcagccgttcttcgccagtgccgagcttcgcccgatcctggcgatcagt
cagcagatcgccggcatgatccagcccgacgctgtcgtgcgtcgcggcaatgcctcgcgc
ggcgtgctcagcttcctcgatgcgcgcaactggctgctggacgaggcgaagaagggtcgc
agcatccagcgcttcaagggcctgggcgaaatgaacccggagcagctgtgggataccacg
gtgaatccggacacccggcgcatgctgcaggtcggcatcgaggatgccatcgccgccgac
cagatgttctcgatgctgatgggcgaggcggtcgaaccgcgtcgcgatttcatcgaggcg
aacgcgctgaaggtcgccaacctggacatttga
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