Rhodanobacter thiooxydans: LRK53_01560
Help
Entry
LRK53_01560 CDS
T08065
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03420
Nucleotide excision repair
rth03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LRK53_01560
03430 Mismatch repair
LRK53_01560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rth03400
]
LRK53_01560
Enzymes [BR:
rth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRK53_01560
DNA repair and recombination proteins [BR:
rth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRK53_01560
MMR (mismatch excision repair)
Other MMR factors
LRK53_01560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
Viral_helicase1
DUF3553
Motif
Other DBs
NCBI-ProteinID:
UJJ55119
LinkDB
All DBs
Position
complement(368923..371238)
Genome browser
AA seq
771 aa
AA seq
DB search
MDVSYLIDPLNAAQREAVCAPPGHYLVLAGAGSGKTRVLTHRIGWLTQAERVPPWAILAV
TFTNKAAGEMRARLEALIPGGTQGLTVGTFHGIAHRLLRRHWREAGLPEAFQILDADDQL
RLVKRVIAGLGLDDAKFPPRQACWQINNWKDEGKRPDAIEHREHPVTQTFVRIYQAYEDA
CRRAGLVDFAELLLRAHELWLKNPAVLAHYQQRWRYLLVDEFQDTNTLQYAWIRVLAGNT
GQVFVVGDDDQAIYGWRGAKVENVQQFLRDFPGARTIKLEQNYRSTSTILKAANSVIQRN
GSRLGKQLWTAGEDGQRIALYAAYNEQDEARFVVERIREYIDEQGSAKDCAILYRSNAQS
RNFEEQLAQRNIGYRVYGGQRFFERAEVKDALAYLRLTANRHDDAAFERAVNTPPRGIGE
RTLDALRRRARAEDTSLWEAALAELAGGNELAGRAKNAVKGFLALIDQMAHAFRPLSLRR
PSGSPLAGERGWGEGTGSPEGSAPPVPSPPAPLPEGEGSQGLTLAEQIDHAITHTGLRDF
YEKDSRGNAESRVENLDELVNVASRFERTAEDIDAGLSELSAFLSHATLEAGENQGEAWD
DCVQLMTLHSAKGLEFPLVFLVGMEEGLFPSQRSTEDEGRLEEERRLAYVGITRARERLV
VTHAESRRMHGTEMLARPSRFLGEMPAELIDEVRPRVHVTRPLYAGRPHEIAPSLEEALP
VKLGQRVSHPSFGEGVVISAEGSGAHTRLQVNFEGAGSKWLVAAYANLTPL
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggatgtctcgtacctgatcgacccgctcaacgccgcccagcgcgaagctgtgtgcgcc
ccgcccggccattacctggtgctggccggcgccggctccggcaagacccgcgtgctgacc
caccgcatcggctggttgacccaggccgagcgggtgccgccgtgggcgatcctcgccgtc
accttcaccaacaaggccgccggcgagatgcgcgcgcggctggaagcgctgattccgggc
ggcacccagggcctcaccgtgggcaccttccacggcatcgcgcaccggctgctgcgccgg
cactggcgcgaggcgggcctgcccgaagcgttccagatcctcgacgccgacgaccagctg
cggctggtcaagcgcgtcatcgccgggctgggcctggacgatgcgaagttcccgccgcgc
caggcctgctggcagatcaacaactggaaggacgagggcaagcggcccgatgcgatcgag
caccgcgagcatccggtcacgcagaccttcgtgcgcatctaccaggcctacgaggacgcc
tgccgccgcgccggcctggtcgacttcgccgaactgctgctgcgcgcgcacgagctgtgg
ctgaagaacccggccgtgcttgcgcactaccagcagcgctggcgctatctgctggtcgac
gagttccaggacaccaacacgctgcagtacgcgtggatccgcgtgctggcgggaaacacc
ggccaggtgttcgtggttggcgacgacgaccaggcgatctacggctggcgcggcgccaag
gtggagaacgtgcagcagttcctgcgcgacttccccggcgcgcgcacgatcaagctggaa
cagaactaccgctccacctcgaccatcctgaaggccgccaacagcgtgatccagcgcaac
ggcagccgcctcggcaagcagctgtggaccgcgggcgaggatggtcagcgcatcgcactg
tatgcggcctacaacgaacaggacgaggcgcgcttcgtggtcgagcgcatccgcgaatat
atcgacgagcagggttcagcgaaggactgcgcgatcctgtaccgctcgaacgcgcagtcg
cgcaacttcgaggagcagctggcccagcgcaacatcggctaccgcgtctacggcgggcag
cgcttcttcgagcgcgccgaggtcaaggatgcgctggcctatcttcgcctcaccgccaac
cgccacgacgacgccgcgttcgagcgcgcggtgaacaccccaccgcgcggcatcggcgag
cgcacgctggacgcgctgcgccgccgcgcccgcgcggaggacacctcgctgtgggaagcc
gcgctggccgagctggccggcggcaacgaactggccggccgcgcgaagaatgcggtgaaa
gggttcctggccttgatcgaccagatggcacacgccttcaggcccctctccctccggcga
ccctcagggagtccccttgcgggtgagaggggttggggtgagggtacgggatcgccggaa
ggctccgctccgcccgtaccctcacccccagcccctctcccagagggagaggggagccaa
ggcctcaccctggccgaacagatcgaccacgcgatcacccacaccggcctgcgcgacttc
tacgagaaggattcacgcggcaacgccgagtcgcgggtggagaacctggacgagctggtc
aacgtggccagccgcttcgagcgcactgccgaggacatcgacgccggcctgagcgaactc
tccgcgttcctctcgcacgccacgctggaagcgggcgagaaccagggcgaagcctgggac
gactgcgtgcagctgatgacgctgcactcggccaagggtctggagtttccgctggtgttc
ctggtcggcatggaggaaggcctgttccccagccagcgctccaccgaggacgagggccgg
ctggaggaagaacgccggctcgcctacgtcggcatcacccgcgcccgcgagaggctggtg
gtcacccacgccgaatcgcgtcgcatgcacggcaccgagatgctggcgcggccgtcgcgc
ttcctcggcgaaatgcccgccgaactgatcgacgaggtgcgcccacgcgtgcacgtcacc
cgcccgctgtacgccggccgcccgcacgagatcgcaccgtcgctggaggaagcgctgccg
gtgaaactcggccagcgcgtcagccatcccagcttcggcgagggcgtggtgatcagcgcc
gaaggcagcggcgcgcacacccgcctgcaggtgaacttcgaaggcgctggcagcaagtgg
ctggtggcggcctacgccaacctcacgccgctgtag
DBGET
integrated database retrieval system
