Rhodanobacter thiooxydans: LRK53_01570
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Entry
LRK53_01570 CDS
T08065
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03030
DNA replication
rth03410
Base excision repair
rth03420
Nucleotide excision repair
rth03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LRK53_01570 (polA)
03410 Base excision repair
LRK53_01570 (polA)
03420 Nucleotide excision repair
LRK53_01570 (polA)
03440 Homologous recombination
LRK53_01570 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rth03032
]
LRK53_01570 (polA)
03400 DNA repair and recombination proteins [BR:
rth03400
]
LRK53_01570 (polA)
Enzymes [BR:
rth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LRK53_01570 (polA)
DNA replication proteins [BR:
rth03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LRK53_01570 (polA)
DNA repair and recombination proteins [BR:
rth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LRK53_01570 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LRK53_01570 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
UJJ55121
LinkDB
All DBs
Position
complement(372018..374795)
Genome browser
AA seq
925 aa
AA seq
DB search
MPKLILIDGSSYLYRAFHALPPLSNARGEPTGALFGVVNMLRATLKANPDYLAFVSDAPG
PTFRDALYDRYKANRPPMPEELRSQVEPMLATVGALGFPILRVDGVEGDDVIGTLALQAQ
ALGIEVEVSTSDKDMAQLVGPRVTLVNTMTGTTTDRAGVLAKFGVQPEQIIDFLALTGDA
IDNIPGVPKCGPKTAAKWLAEYATLDGVIANADRIGGKIGESLRATLPQLPLSRQLATIK
TDVALEFGPTDLTRREADTTLLRELYTRYEFKAALKELDGPTDAALPSPLGRGAVGEGAT
GAHGSAEPSPQPLSRGERGFEFSAKGDYELVTTQAQLDAWLEKLRSAELIAFDTETTSID
AMRADIVGLSLAVEPGKACYIPLDHDYPGVPKQLDRDSVLAALKPVFEDPARPKLGQHAK
YDINILSHYGIAVQGLRHDSMLESYVWNTTATRHDMDSLAKKYLGYDTVKYEEVAGKGAK
QISFSQVDLDTACRYAAEDADVTLRLHHALWPKLVSVPSLRRVYEEIEIPLVPVLAEMER
RGVLIDGDELRRQSQQLGKRMLELQQQSYALAGREFNLDSPKQLQAVLFDELHLEAKLKT
PTGQPSTNEEALEAIADTHELPRLILDYRGLAKLRSTYTDKLSSIVNPRTGRVHTSYHQG
SVATGRISSSDPNLQNIPVRTEEGRRIRQAFIAPPGWRVMAADYSQIELRIMAHLSGDEG
LLKAFREGGDVHRATAAEVFGLKPEEVSANQRRAAKAINFGLMYGMSAFGLARQLGVDRG
EASDYMARYFSRYPGVRAFMDATREQAHRDGYVETIFGRRLYLENLTSRNAGLRQGAERA
AVNAPMQGSAADIIKRAMIGVAAWLADRDDAHMLMQVHDELVFEVQAEAVDAVRAAVNER
MSGAAQLAVPLLVDVGVGANWDEAH
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaactcatcctgatcgacggctcgtcctacctgtaccgcgcgttccacgcgctg
ccgccgctctccaatgcgcgcggcgagcccaccggcgcgctgttcggcgtggtcaacatg
ctgcgtgccaccttgaaggcgaaccccgactacctggccttcgtcagcgatgcgcccggc
cccaccttccgcgacgcgctgtatgaccgctacaaggcgaaccgcccgccgatgccggag
gagctgcgctcccaggtcgagccgatgctggcgaccgtgggcgcgctgggcttcccgatc
ctgcgcgtggacggcgtggagggcgatgacgtgatcggcacgctggcgctgcaggcgcag
gcgctcggcatcgaggtggaggtttccaccagcgacaaggacatggcgcagctggtcggc
ccgcgcgtcaccctggtcaacaccatgaccggcaccacgacggatcgcgccggcgtgctg
gccaagttcggcgtgcagccggagcagatcatcgacttcctcgccctcaccggcgacgcc
atcgacaacatccccggcgtgcccaagtgcggcccgaagaccgccgccaagtggctggcc
gaatacgccacgctggacggcgtgatcgccaatgccgaccgcatcggcggcaagatcggc
gagagcctgcgcgccacgctgccgcagctgccgctgtcgcgccagctggcgacgatcaag
accgacgtggcgctggagttcggccccaccgacctgacccggcgcgaggccgacaccacg
ctgctgcgcgagctgtacacgcgctacgaattcaaggcggcgctgaaggagctggacggg
ccgacggatgctgctctcccctctccccttgggagaggggccgtgggtgagggtgcgacc
ggagcgcacggctcagccgaaccctcgccccaacccctctcccgaggggagaggggcttc
gaattctcggcgaaaggcgactacgaactcgtcaccacccaggcacagctcgacgcttgg
ctggaaaaactccgcagcgccgaactgatcgcgttcgacaccgaaaccaccagcatcgac
gcgatgcgcgcggacatcgtcggcctcagcctcgcggtggagccgggcaaggcctgctac
atcccgctcgaccacgactatcccggcgtgccgaagcagctcgatcgcgacagcgtgctc
gccgccttgaagcccgtcttcgaggatccggcgcggcccaaactgggccagcacgcgaag
tacgacatcaacatcctgtcgcactacggcatcgccgtgcaggggctcaggcacgactcg
atgctggagtcctacgtgtggaacaccaccgccacgcgccacgacatggactcgctggcg
aagaagtacctcggctacgacacggtgaagtacgaggaagtcgccggcaagggcgcgaag
cagatttcgttctcgcaggtggacctggacaccgcctgccgctacgccgcggaggacgcc
gacgtcaccctgcgcctgcaccatgcgctgtggccgaagctggtgagcgtgccgtcgctg
cgccgcgtgtacgaggagatcgagatcccgctggtgccggtgctggccgagatggaacgc
cgcggcgtgctgatcgacggcgacgagctgcgccggcagagccagcagctgggcaagcgc
atgctggaactgcagcagcagtcgtacgcgctggccgggcgcgagttcaacctcgattcg
ccgaagcagctgcaggccgtgctgttcgacgaactgcacctcgaagcgaaactgaagacg
ccgaccggccagccgtccaccaacgaagaggcgcttgaggcgatcgccgacacccacgaa
ctgccgcggctgatccttgactatcgcggtctggccaagctgcgcagcacgtacacggac
aagctgtccagcatcgtcaacccgcgcaccgggcgcgtgcacaccagctaccaccagggc
tcggtggcgaccgggcggatttcctcgtccgatccgaacctgcagaacatcccggtacgc
accgaggaaggccgacgcatccgccaggccttcatcgcgccgccgggctggcgggtgatg
gcggcggactactcgcagatcgagctgcgcatcatggcgcacctgtccggcgacgagggc
ctgctcaaggcgttccgcgagggcggcgacgtgcaccgcgccaccgccgccgaggtgttc
gggctgaagcccgaggaggtcagcgccaaccagcgccgcgccgccaaggcgatcaacttc
ggcttgatgtacggcatgagcgcgttcggcctggcgcgccagctcggcgtggaccgtggc
gaagccagcgactacatggcgcgttatttttcccgctaccccggcgtgcgcgcgttcatg
gacgccacccgcgaacaggcccatcgcgacggctacgtggagacgatcttcggccgccgc
ctgtacctggagaacctcacctcgcgcaacgccggcctgcgccagggcgccgagcgcgcc
gcggtgaacgcgccgatgcagggcagcgcggcggacatcatcaaacgcgcgatgatcggc
gtggcggcgtggctggccgatcgcgacgacgcccacatgctgatgcaggtgcacgacgag
ctggtgttcgaggtacaggcggaggccgtcgacgccgtccgcgccgcggtgaacgaacgg
atgtccggcgcggcgcaactggcggtgccgctactggtcgacgtcggcgtgggtgcgaac
tgggacgaagcgcattga
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