Rhodanobacter thiooxydans: LRK53_03700
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Entry
LRK53_03700 CDS
T08065
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRK53_03700 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rth03021
]
LRK53_03700 (rho)
03019 Messenger RNA biogenesis [BR:
rth03019
]
LRK53_03700 (rho)
Transcription machinery [BR:
rth03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LRK53_03700 (rho)
Messenger RNA biogenesis [BR:
rth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LRK53_03700 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_22
Mor
AAA_25
TFIIA
Motif
Other DBs
NCBI-ProteinID:
UJJ55514
LinkDB
All DBs
Position
complement(872622..874406)
Genome browser
AA seq
594 aa
AA seq
DB search
MSDTENRTPNDAPGADAGLVAENKPEPRPRAPRRTAAAIAAANAEKAAAADKPAVPAIVP
AAAPASASQSIPPAAPRPTQESRDFVSPAGQNPDQPASQNPGQPQNQNQQGQGQGQNPNQ
NNGGREGREGRGRRRRNERGGNPNQQQGRQQHPRPNPNGLPVDDDNADPGSNDRVINLTE
LKRMKAPQLLEFAESLGVHEGVARARKQDVIFNVLKAHARSGGGIWAEGVLEILQDGFGF
LRSADESYLAGPDDIYVSPSQIRRFNLRTGDYITGRVRHPKEGERYFAMLRVDDINGDPP
EASKNKMLFENLTPLFPRKAYKLERGNGSSEDITGRILDLIAPIGKGQRGLIVSQPKSGK
TMMLQNVAQAITYNHPEAHLIMLLIDERPEEVTEIARTVRAEVISSTFDEPAVRHVQVAE
MVIERAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAA
RNVEEGGSLTIIATALTETGSKMDEVIYEEFKGTGNMEVHLSRRISEKRVYPAIDINRSG
TRREDLLIDPDMLAKIWILRKLLHPMDELAAMEFMLDKMKNTKSNDEFFNSMKR
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgataccgaaaacagaaccccgaacgacgccccgggcgccgacgccggcctcgtt
gccgaaaacaagcccgagccgcgcccccgcgcgccgcgccgcacggccgccgcgatcgcg
gccgcgaacgccgagaaggcggccgcggccgacaagcctgcggtgcctgcgatcgttccg
gcggcggcacccgcctcggccagccagtcgataccgccggcggcgccacgcccgacgcag
gaatcgcgtgacttcgtatcgccggctggccagaacccggaccagccggccagccagaac
cccggccagccgcagaatcaaaaccaacagggccagggccagggtcagaacccgaaccag
aacaacggcggccgcgagggccgcgaaggccgcggccggcgccggcgcaacgaacgcggc
ggcaacccgaaccagcagcaagggcgccagcagcatccgcgccctaacccgaacggcctg
ccggtggacgacgacaacgccgatccgggcagcaacgaccgggtgatcaacctcaccgag
ttgaagcgcatgaaggcgccgcagctgctggagttcgccgagtcgctgggcgtgcacgaa
ggcgtcgcccgcgcgcgcaagcaggacgtgatcttcaacgtgctcaaggcgcatgcccgc
tccggcggcggcatctgggccgagggcgtgctggagatcctgcaggacggcttcggcttc
ctgcgctcagccgacgagagctacctggccggtcccgacgacatctacgtcagccccagc
cagatccgccgcttcaacctgcgcaccggcgactacatcaccgggcgcgtgcgccacccg
aaggaaggcgagcgctacttcgccatgctgcgcgtcgacgacatcaacggcgatccgccg
gaggcgtcgaagaacaagatgctgttcgagaacctcaccccgctgttcccgcgcaaggcg
tacaagctggagcgtggcaacgggtcgagcgaggacatcaccggccgcatcctcgacctg
atcgcgccgatcggcaagggccagcgcggcctgatcgtctcgcagccgaagtccggcaag
acgatgatgctgcagaacgtggcccaggcgatcacctacaaccaccccgaagcgcatctg
atcatgctgctgatcgacgagcgcccggaagaggtgaccgagatcgcccgcaccgtgcgc
gccgaggtcatctcctcgaccttcgacgagccggccgtgcgtcacgtgcaggtcgccgag
atggtgatcgagcgtgccaagcgcctggtcgagcacaagcgcgacgtggtgatcctgctc
gactcgatcacccgcctcgcccgcgcctacaacaccgtggtgcccagttccggcaaggtg
ctcaccggcggcgtcgacgcgaacgcgctgcagcgcccgaagcgcttcttcggcgccgcc
cgcaacgtggaggaaggcggcagcctgaccatcatcgccaccgcactgaccgaaaccggc
agcaagatggacgaggtgatctacgaggagttcaaaggcaccggcaacatggaagtgcac
ctgtcccggcgcatctccgagaagcgcgtctacccggcgatcgacatcaaccgctccggc
acccgccgcgaggacctgctgatcgacccggacatgctggccaagatctggatcctgcgg
aagctgttgcacccgatggacgaactggccgcgatggagttcatgctcgacaagatgaaa
aacaccaagtccaacgacgagttcttcaattcgatgaagcgctga
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