Rhodanobacter thiooxydans: LRK53_04365
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Entry
LRK53_04365 CDS
T08065
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth00521
Streptomycin biosynthesis
rth00523
Polyketide sugar unit biosynthesis
rth00525
Acarbose and validamycin biosynthesis
rth00541
Biosynthesis of various nucleotide sugars
rth01100
Metabolic pathways
rth01110
Biosynthesis of secondary metabolites
rth01250
Biosynthesis of nucleotide sugars
Module
rth_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
LRK53_04365 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
LRK53_04365 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
LRK53_04365 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
LRK53_04365 (rfbB)
00525 Acarbose and validamycin biosynthesis
LRK53_04365 (rfbB)
Enzymes [BR:
rth01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
LRK53_04365 (rfbB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
3Beta_HSD
adh_short
NAD_binding_10
KR
NmrA
Motif
Other DBs
NCBI-ProteinID:
UJJ55638
LinkDB
All DBs
Position
complement(1011965..1013035)
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AA seq
356 aa
AA seq
DB search
MNESSTRSKTLLITGGAGFIGANFVLQAVADGLRVINLDKLTYAGNPDTLASLQGNGRHV
FVHGDIGDRALVAKLLAEHRPDAIVNFAAESHVDRSIDGPAEFVQTNVVGTLGLLECARD
YWRGLEGGAHEAFRFLHVSTDEVYGSLGAEGKFTETTPYAPNSPYSASKAASDHLVRAFH
HTYGLPVLTTNCSNNYGPYQFPEKLIPLVTAKALAGEPLPVYGDGLNVRDWLFVGDHCSA
IRRVLDAGRVGETYNVGGNAERENITVVKTICSLLDACRPLADGRPRESLITYVRDRPGH
DRRYAIDSSKLQNELGWRPSQTFETGIAQTVDWYLANQPWVQRVLDGSYRMERLGS
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaatcatccacgaggagcaagaccttgctgatcaccggcggggccggcttcatc
ggcgccaatttcgtgctgcaggcggtggccgacggcctgcgcgtgatcaacctcgacaag
ctcacctatgccggcaatccggacacgctggcgtcgctgcagggcaacgggcggcatgtg
ttcgtgcatggcgatatcggcgatcgcgcgctggtggcgaagctcctggctgagcaccgg
cccgatgccatcgtgaatttcgccgccgagtcgcacgtggaccgttcgatcgacggcccg
gccgagtttgtgcagaccaacgtggtcggcacgctgggcctgctggaatgcgcccgcgac
tactggcgcggcctggaaggcggcgcccacgaggcgttccgtttcctgcacgtgtccacc
gacgaggtgtacggctcgcttggcgccgagggcaagttcaccgagaccacgccatacgcg
ccgaactcgccgtactccgcgtcgaaggccgcctccgaccatctggtgcgagcgttccac
cacacttacggcctgccggtgctgaccaccaactgctccaacaactacgggccctaccag
ttcccggagaagctcatcccgctggtgaccgccaaggcgctggctggagaaccactgccg
gtgtacggcgacggcctgaacgtccgtgactggctgttcgtcggcgaccactgcagcgcg
atccgtcgcgtgctggatgccggccgcgtcggcgaaacctacaacgtgggcggcaatgcc
gagcgcgagaacatcaccgtggtgaagactatctgcagcctgctcgatgcatgccggccg
ctggccgacggccgcccacgcgaatcgttgatcacctacgtgagggatcgccccggccac
gaccgccgctatgcgatcgattccagcaagctgcagaacgagctgggctggcggccctcg
caaacctttgaaaccggcatcgcacaaacggtggattggtacctcgcaaaccagccgtgg
gtgcagcgcgtgctcgacggcagctaccgcatggagcgactcggttcatga
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