Rhodanobacter thiooxydans: LRK53_06335
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Entry
LRK53_06335 CDS
T08065
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LRK53_06335 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rth03021
]
LRK53_06335 (rpoB)
03400 DNA repair and recombination proteins [BR:
rth03400
]
LRK53_06335 (rpoB)
Enzymes [BR:
rth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LRK53_06335 (rpoB)
Transcription machinery [BR:
rth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LRK53_06335 (rpoB)
DNA repair and recombination proteins [BR:
rth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LRK53_06335 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Thioredoxin_4
DUF3231
Motif
Other DBs
NCBI-ProteinID:
UJJ56519
LinkDB
All DBs
Position
1444593..1448756
Genome browser
AA seq
1387 aa
AA seq
DB search
MMAYSFTEKKRIRKDFGKRPPVLGVPNLLTIQTDSYREFLQEHVAPKQRGDKGLHAALKS
VFPISSYSGNAALEYVDYRLGEPAFDERECRNRGMTFGAPLRTTVRLVIYDKDSPASKKV
VKYIKEQEVYMGEIPLMTDTGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFS
ARVIPYRGSWLDFEFDPKDALFTRIDRRRKLPVTVLLRALGYNNEEMLGIFFEHNVFHLG
NKGGTTLELVAERLRGETLSFDLAIGGKVLVEAGKRITARHVRQLAAENITALEVPDDYP
VGRIVATDIVDAKTGELLASANDEITAEQMENFRKAGIEVVPTLYVNDLDRGAYISHTLR
IDNTKTPLEALVEIYRMMRPGEPPTKDAAQNLFFNLFFTFDRYDLSAVGRMKFNRRVGRK
EILGPGVLYDHKYFSERKEEESQRLVKEQGESSDILDVLKVLIDIKNGHGTVDDIDHLGN
RRVRSVGEMAENTFRIGLVRVERAVRERLSLAEADGLTPQDLINAKPVAAAVKEFFGSSQ
LSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIG
LINSLAVYARTNAYGFLETPYRKVANSKVTDKVDYLSAIEEGDHVIAQANSPLDKHGAFL
EDFVSCRFRGESELRPAAEVDYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAV
PTLRSQTPLVGTGIERAVARDSGVIVSAKRGGVIDQVDAARIVVRVNEEEVGGNDAGVDI
YTLTKYTRSNQNTNLNQRPLVNVGDVVAKGDTLADGSSTDLGELALGQNMLIAFMPWNGY
NFEDSILLSERVVQEDRYTSIHIEELSCIARDTKLGAEEITADIPNVGEQALARLDESGI
VYIGAEVKAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVID
VQVFTRDGIEKDKRAKQIEETEVKRVRKDLDDQFRILEVAIYSRMRTQLVGKSAMSGPGG
LKRGAEITDAYLDGLKKDDWFKVNVKDEEVTEFLERAAEQIKRHKEEFDKRFKEKQGKIT
QGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMANGEAVDIC
LNPLGVPSRMNIGQILEVHLGWAAKGLGKKIQKMIEAQEKVAEIRKFLDQIYNSHVAGAV
QHVDLKSLTDKEIFALATNLQEGVPMATPVFDGAEETEIKAMLKLADLPESGQTMLYDGR
TGEAFDRPVTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGNHEMSAGMPESFNVLVKEIRSLAID
IDLEEVK
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atcatggcctactcgtttaccgagaagaaacgcatccgcaaggactttggcaagcgtccg
cccgtgctgggcgtgccgaacctgctgaccatccagactgattcctaccgggaattcctg
caggagcacgtcgcgccgaaacagcgcggcgacaagggtttgcatgccgcgttgaagtcg
gtgttcccgatctccagctactcgggcaatgccgcactggagtacgtggactaccgcctg
ggcgagccggcgttcgacgagcgcgagtgccgcaaccgcggcatgaccttcggtgcgccg
ctgcgcaccaccgtgcgcctggtgatctacgacaaggacagcccggcctcgaagaaggtg
gtcaagtacatcaaggagcaggaggtctacatgggcgagatcccgctcatgaccgacacc
ggcaccttcatcatcaacggcaccgagcgcgtgatcgtctcgcagctgcatcgttcgccg
ggggtgttcttcgaccacgatcgcggcaagacgcacagctcgggcaagctcttgttctcg
gcccgcgtgatcccctaccgcggctcctggctggacttcgagttcgacccgaaggacgcg
ctgttcacccgcatcgaccgtcgccgcaagctgccggtgacggtgctgctgcgcgcgctc
ggctacaacaacgaggagatgctgggcatcttcttcgagcacaacgtgttccacctgggc
aacaagggcggcaccacgctggagctggtcgccgagcgcctgcgcggcgagacgctctcc
ttcgacctggcgatcggtggcaaggtgctggtggaagccggcaagcgcatcaccgcacgc
cacgtgcgccagctggcggccgagaacatcaccgcgctggaagtgccggacgactacccg
gtcggccgcatcgtggccaccgacatcgtcgacgccaagaccggcgaactgctggcctcg
gcgaacgacgagatcactgccgagcagatggagaacttccgcaaggccggcatcgaagtc
gtgccgacgctgtacgtcaacgatctcgaccgcggcgcctacatctcgcacaccctgcgc
atcgacaacaccaagacgccgctggaggcgctggtggagatttaccgcatgatgcgcccg
ggcgagccgccgaccaaggacgctgcgcagaacctgttcttcaacctgttcttcaccttc
gaccgctacgacctgtcggcggtcggccggatgaagttcaaccgccgcgtgggccgcaag
gaaatcctcggcccgggcgtgctgtacgaccacaagtacttcagcgagcgcaaggaagag
gagtcgcagcggctggtcaaggagcagggcgagtcgtccgacatcctcgacgtgctgaag
gtgctgatcgacatcaagaacggccatggcaccgtcgacgacatcgaccatctgggcaac
cgtcgcgtgcgttcggtcggcgaaatggccgagaacaccttccgcatcggtctggtgcgc
gtggaacgcgccgtgcgcgagcgcctgtcgctggccgaggccgatggcctgaccccgcag
gacctgatcaacgccaagccggtcgcggcggcggtgaaggagttcttcggctcctcgcag
ctgtcgcagttcatggaccagaacaacccgctgtcggaagtgacgcacaagcgccgcgtc
tccgcgctggggccgggtggcctgacccgcgagcgcgccggcttcgaagtgcgcgacgtg
catccgacccactacggccgcgtctgcaccatcgagacgccggaaggcccgaacatcggc
ctgatcaactcgctggccgtgtatgcccgcaccaacgcctacggcttcctcgagacgccg
taccgcaaggtcgccaacagcaaggtcaccgacaaggtcgactacctgtcggcgatcgag
gaaggcgaccacgtgatcgcccaggcgaactcgccgctggacaagcacggcgcgttcctg
gaggacttcgtgtcctgccgtttccgtggcgagtccgagctgcgcccggccgccgaggtc
gactacatggacgtctcgccgatgcagaccgtgtcggtcgccgcggcgctggtgccgttc
ctggagcatgacgacgcgaaccgcgcgctgatgggcgcgaacatgcagcgccaggccgtg
ccgacgctgcgctcgcagaccccgctggtcggtaccggcatcgagcgcgcggtggcgcgc
gactcgggcgtcatcgtctccgccaagcgcggcggggtgatcgaccaggtcgacgcggcg
cgcatcgtggtgcgcgtgaacgaggaggaggtcggcggcaacgacgccggcgtcgatatc
tacacgttgaccaagtacacccgctccaaccagaacaccaacctcaaccagcgcccgctg
gtgaacgtcggcgacgtggtggcgaagggcgacacgctggccgacggttcgtcgaccgac
ctgggcgagctcgcgctcggccagaacatgctgatcgccttcatgccgtggaacggctac
aacttcgaagactcgatcctgctctccgagcgcgtcgtgcaggaggaccgctacacctcg
atccacatcgaggagctgtcctgcatcgcgcgcgacaccaagctgggcgccgaggaaatc
accgccgacatcccgaacgtgggtgagcaggcgctggcgcgcctcgacgaatccggcatc
gtgtacatcggtgccgaggtgaaggccggcgacatcatggtcggcaaggtcacgcccaag
ggcgagagccagctgacaccggaagagaagctgctgcgcgcgatcttcggcgagaaggcg
tccgacgtgaaggacagctcgctgcgcgtgcccccgggcatggacggcaccgtgatcgac
gtgcaggtgttcacccgcgacggcatcgagaaggacaagcgcgccaagcagatcgaggaa
accgaggtcaagcgggtgcgcaaggatctggacgaccagttccgcatcctcgaagtcgcg
atctacagccgcatgcgcacccagctggtcggcaagtccgcgatgagcggtccgggcggc
ctgaagcgcggcgccgagatcaccgacgcgtatctcgacggcctgaagaaggacgactgg
ttcaaggtcaacgtcaaggacgaggaggtcaccgagttcctcgagcgtgccgccgagcag
atcaagcgccacaaggaagagttcgacaagcgcttcaaggagaagcagggcaagatcacc
cagggcgacgacctcgcgccgggcgtgctgaagatggtcaaggtgttcctggccgtgaag
cgtcgcatccagccgggcgacaagatggccggccgccacggcaacaagggcgtggtgtcc
aacgtggtgccggtggaggacatgccgtacatggccaacggcgaggcggtggatatctgc
ctgaacccgctgggcgtgccgtcgcgcatgaacatcgggcagattctcgaggtgcatctg
ggctgggccgccaagggcctgggcaagaagatccagaagatgatcgaggcgcaggagaag
gtggccgagatccgcaagttcctcgaccagatctacaacagccacgtcgccggtgccgtg
cagcacgtcgatctgaagtcgctcaccgacaaggagatcttcgcgctcgccaccaacctg
caggaaggcgtgccgatggcgacgccggtgttcgacggtgcggaagagactgagatcaag
gcgatgctgaagctggctgatctgccggaatccggtcagaccatgctgtacgacggccgc
accggcgaggcattcgaccgcccggtcaccgtgggctacatgcattacctgaagctcaac
cacctggtcgacgacaagatgcacgcgcgctccaccggcccgtactcgctggtcacccag
cagccgctgggcggcaaggcgcagttcggcggccagcgcttcggcgagatggaagtgtgg
gcgctggaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtccgac
gacgtgcagggccgcaaccagatgtacaagaacatcgtcgacggcaaccacgaaatgtcc
gcgggcatgccggagtccttcaacgtgctggtgaaggaaatccgctcgctcgccatcgac
atcgatctggaagaggtcaagtga
DBGET
integrated database retrieval system
