Rhodanobacter thiooxydans: LRK53_06530
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Entry
LRK53_06530 CDS
T08065
Name
(GenBank) mismatch-specific DNA-glycosylase
KO
K03649
double-stranded uracil-DNA glycosylase [EC:
3.2.2.28
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LRK53_06530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rth03400
]
LRK53_06530
Enzymes [BR:
rth01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.28 double-stranded uracil-DNA glycosylase
LRK53_06530
DNA repair and recombination proteins [BR:
rth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LRK53_06530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
UJJ56027
LinkDB
All DBs
Position
complement(1478152..1478673)
Genome browser
AA seq
173 aa
AA seq
DB search
MPRRTERHVLPDLLQPGLALVFCGTAAGRRSAAERAYYAHPGNLFWRALHASGLTPRLLV
PAEFPLLPQFGIGLTDLAKRHSGNDDELPPDAFDAPALFARIERHAPRLLAFTSKNAARS
ALGHAVGYGLQDETLGSTRLFVLPSPSGQARGHWDLAPWLALAELFHAARAGM
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggcggactgagcgccacgtcctgcccgacctgctgcaacccgggctggcactg
gtgttctgcggcaccgccgcgggcaggcgctcggccgccgagcgtgcctactacgcgcat
cccggcaatttgttctggcgcgctctgcacgcatccggcctcacgccacgcctgctcgtg
ccggcggagtttccgctgttgccgcagttcggcatcggcctcaccgacctggccaaacgc
cacagcggcaacgacgacgagctgccgcccgatgcgttcgatgcgcccgccctgttcgcc
cggatcgaacgccacgctccgcgcctgctcgccttcaccagcaagaacgcggcacgcagc
gcactcggccatgccgtcggctacggcctgcaggacgaaaccctcggcagcacgcggctg
ttcgtgctgccctcgccgtccgggcaggcgcgcgggcattgggacctggcgccatggctg
gcactggctgagctgttccacgctgcccgggcgggcatgtag
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