Rhodanobacter thiooxydans: LRK53_07300
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Entry
LRK53_07300 CDS
T08065
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRK53_07300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rth03019
]
LRK53_07300
03009 Ribosome biogenesis [BR:
rth03009
]
LRK53_07300
Enzymes [BR:
rth01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRK53_07300
Messenger RNA biogenesis [BR:
rth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRK53_07300
Ribosome biogenesis [BR:
rth03009
]
Prokaryotic type
rRNA helicases
LRK53_07300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
adh_short
Cas3-like_C_2
P-loop_SecA
UvrA_inter
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
UJJ56171
LinkDB
All DBs
Position
complement(1638886..1640730)
Genome browser
AA seq
614 aa
AA seq
DB search
MSSPAPDHTPVSSGFGALALHPDVLRVLADVGYESPSPIQAATIPPLLEGRDVLGQAQTG
TGKTAAFALPILSRIERKPGKPQALVLAPTRELAIQVAEAFQTYAAHLPGFQVLPIYGGQ
SYGPQLHSLKRGVHVVVGTPGRVIDHLDKGTLDLSELKFLVLDEADEMLRMGFIDDVEKV
LQATPPGRQVALFSATMPAPIRKIAQRHLKEPVEVTIKAATTTAANIHQRYWFVSGMHKL
DALTRILEAEPFDAMIIFARTKQATEELAEKLQARGLAAAAINGDIAQAQRERVIQQLKD
GKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRE
RGMLHAIERATRQPIEQMQLPSVEVVNDVRIGKFKQRISDMLAQGDLGEFQKLIEQYEQE
HNVPAVEIAAALARIAQGDQPLLLAPPPKREKYEPAAREHKPRERDSASRTTREHKPRSH
EDALPRESGHPHPLRAHATEQGKRTYRIEVGHEHGVKPGNIIGAIANEAGLDSQYIGRLS
IRDHYSLIDLPDGMPKEIFEHLKKVWVVQQQLRIHEWDGSDTGNSAPPAHKPGGFRKPGS
FKPRPGGAKPPRRK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcccctgctcccgaccacaccccggtgtcgtccggcttcggcgcacttgcgctg
caccccgatgtcctgcgcgtgctggccgacgtcggctacgagtccccctcgccgatccag
gccgcgaccatcccgccgctgctggaaggccgcgacgtgctcggccaggcgcagaccggc
accggcaagactgccgcgttcgcgctgccgatcctgtcgcgtatcgagcgcaagcctggc
aagccgcaggcgctggtactggcgcccacgcgcgagctggcgatccaggtggccgaggca
ttccagacctacgccgcccacctgcccggcttccaggtgctgccgatctacggcggccag
agctacggcccgcagctgcactcgctcaagcgcggcgtgcacgtggtggtcggcacgccc
ggccgcgtgatcgatcacctggacaagggcacgctggacctctccgagctgaagttcctg
gtgctcgacgaagccgacgagatgctgcgcatgggcttcatcgacgacgtggagaaagtg
ctgcaggccaccccgccgggacgccaggtcgcattgttctcggcgaccatgccggcgccg
atccgcaagatcgcgcagcgccacctgaaggagccggtcgaggtcaccatcaaggcggcc
accaccaccgcggcgaacatccaccagcgctactggttcgtcagcggcatgcacaagctc
gacgcgctgacgcgcatcctcgaggccgagccgttcgacgcgatgatcatcttcgcgcgc
accaagcaggccaccgaggagctggccgagaagctgcaggcgcgcggcctggccgccgcc
gcgatcaacggcgacatcgcccaggcgcagcgcgagcgggtgatccagcagctgaaggac
ggcaagctcgacatcctggtcgccaccgacgtggccgcgcgcggcctcgacgtggagcgg
atcagccatgtgctgaactacgacatcccctacgacaccgaaagctacgtgcaccgcatc
ggtcgcaccggtcgcgccgggcgcagcggcgaggcgatcctgtttgtcagcccgcgcgag
cgcggcatgctgcacgcgatcgagcgcgccacccggcagccgatcgagcagatgcagctg
ccgtcggtcgaggtggtcaacgacgtgcgcatcggcaagttcaagcagcgcatcagcgac
atgctggcccagggcgaccttggtgaattccagaagctgatcgagcagtacgagcaggaa
cacaacgtgccggccgtcgagatcgccgccgcgctggcgcgcatcgcccagggcgaccag
ccactgctgctggcgccgccgccgaagcgcgagaaatacgaaccggccgcccgcgagcac
aagccacgcgagcgcgacagcgccagccgcacgacccgcgagcacaaaccgcgcagtcac
gaagacgcgctgccgcgcgagtctggccatccccacccgctgcgcgcgcacgccaccgag
cagggcaagcgcacctatcgtatcgaggtcggccacgagcacggcgtgaagccgggcaac
atcatcggcgcgatcgccaacgaagccgggctggacagccagtacatcggccgcctcagc
atccgcgaccactacagcctgatcgacctgcccgacggcatgccgaaggaaatcttcgag
cacctgaaaaaggtgtgggtggtgcagcagcagttgcgcatccatgagtgggacggcagc
gacaccggcaacagcgcaccgccggcgcacaagccgggcggtttcaggaagcccggcagc
ttcaagccgcggcccggcggggccaaaccgccgcggcgcaagtaa
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