Rhodanobacter thiooxydans: LRK53_07840
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Entry
LRK53_07840 CDS
T08065
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LRK53_07840 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rth03400
]
LRK53_07840 (recD)
Enzymes [BR:
rth01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LRK53_07840 (recD)
DNA repair and recombination proteins [BR:
rth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LRK53_07840 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
RecD_N
Helicase_RecD
AAA_22
UvrD-helicase
Mg_chelatase
nSTAND3
SLFN-g3_helicase
AAA_28
Herpes_Helicase
AAA_16
NTPase_1
DEAD
Motif
Other DBs
NCBI-ProteinID:
UJJ56270
LinkDB
All DBs
Position
complement(1749246..1751234)
Genome browser
AA seq
662 aa
AA seq
DB search
MNQPLSHAADADERAIDQTLAQWVLGRTGSALLAAAARAASRAEGRGHSCAVLADPDVGL
DADALDALRRHDWVGDGSSFTPFVLDAQGRFYLWRNWQHEAKLAEAILQRCAQRTLPLAA
DTLANDLDALFAGMPRGATDGQRAAVAAVPGAHFFVLTGGPGTGKTTTVVRMLLMLLRHA
QACGLPAQPSIALAAPTGKAAQRLAQAIARGKAELQAALPPVGRAPPAGSGFSASRGAAA
GSARPTELQATWDPVGAQPVRDGSSSRSTSGHRAQAALLQQIPHADARTLHRLLGYRPMD
DSFERGPHNPLAEDIVVVDEASMVDLAMMRQLLQALRPAAVLILLGDPGQLASVDAGSVL
ADIVAAAPRQRLPPPLAGLLAPLLQHPPGVAADDAPLAGQVLTLSHSWRAGSGLQRGVEA
LRDAPDPTWLDALLGERRDGDLHLRHCPNMHALRACVDGWIERHAGLLQSLLTPAVDAAE
ALQRLRQLQILCALRDGPFGAQGINELMLRRLAVRFGIDADRTWYHGRPVIITRNDYARG
LFNGDVGIAQEGAEGLRVWFELSDRDGNAGLRSYSPRALPAHDSAWAITIHRSQGSEYRD
VAVLLPPDADNRILTRELVYTAISRAKEHAEIWSTDDALRTALARPIRRLGGLRERLLPA
SA
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaaccgctatcgcatgctgccgacgccgacgagcgcgcgatcgaccagaccttg
gcgcaatgggtgctcgggcgcaccggctccgccctgctcgccgccgccgcacgcgcggcc
agccgcgccgagggccgcggccattcctgcgcggtgctggccgacccggacgtcggcctc
gacgccgacgcactggatgcgctgcgccggcacgactgggtcggcgacggcagttcgttc
acgccgttcgtgctcgacgcgcaagggcgcttctacctgtggcgcaactggcagcacgag
gcgaagctcgccgaggcgatcctgcagcgctgcgcgcaacgcacgctgccgctcgccgcc
gataccctcgccaacgacctggatgcgctgttcgccggcatgccgcgcggcgccaccgat
ggtcagcgtgccgccgtggccgcggtgcccggcgcgcatttcttcgtgctcaccggcggc
cccggcactggcaagaccaccaccgtggtgcgcatgctgctgatgctgctgcgccatgcg
caggcctgcgggttaccggcgcagccgtcgatcgcgctcgctgcgcccaccggcaaggcc
gcccagcggctggcgcaggccatcgccaggggcaaggccgagctgcaagctgctctaccc
cccgtagggcgggcaccgcccgccggctccggcttttcggcatcacggggagcagcggcg
ggcagtgcccgccctacggagctgcaggcaacatgggacccggtaggagcgcagcctgtg
cgcgatggctcttcgtcccgatccacatcaggccatcgcgcacaggctgcgctcctacag
cagattccgcatgccgatgcgcgcacgctgcaccgcctgctcggctaccggccgatggac
gacagcttcgagcgcggcccgcacaacccgctggccgaggacatcgtggtggtggacgag
gcgtcgatggtggacctggcgatgatgcgccagctgctgcaggcgctgcggcccgcggcg
gtgctgatcctgctcggcgacccgggccagctcgcctcggtcgatgccggctcggtgctg
gccgacatcgtcgccgccgccccgcgccagcggctgccgccgccgctggccggcctgctc
gcgccgctgctgcaacacccaccaggcgtcgccgccgacgatgccccgctcgccggccag
gtactcacgctgagccacagctggcgcgccggcagcggcctgcagcgcggcgtcgaggcg
ctgcgcgacgcccccgacccgacatggctggacgcactgctgggcgaacgccgcgatggc
gacctgcacctgcgccactgccccaacatgcatgccctgcgtgcctgcgtggatggctgg
atcgagcgccacgccgggctgctgcagtcgctgctgacgccggccgtcgacgctgccgaa
gcgttgcagcggctgcgccagctgcagatcctgtgcgcgctgcgcgacggcccgttcggc
gcgcagggtatcaacgagctgatgctgcgccggctcgccgtccgtttcggcatcgacgcc
gaccgcacctggtatcacggtcgccccgtcatcatcacccgcaacgattacgcccgcggc
ctgttcaacggcgacgtcggcatcgcacaggaaggtgccgaagggttgcgtgtgtggttc
gagctcagcgaccgcgacggcaacgccggcctgcgcagctactcgccacgcgcgctgccc
gcgcacgacagcgcctgggcgatcaccatccaccgcagccagggctcggagtaccgcgac
gtggccgtgctgctgccgccggacgccgacaatcgtatcctcacccgcgaactggtctac
accgccatctcgcgcgcgaaggagcatgccgagatctggagcactgacgatgcgctgcgc
accgcgctggcgcggccgatccggcggctgggcggcctgcgcgagcggttgctgcccgca
tcggcatga
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