KEGG   Rhodanobacter thiooxydans: LRK53_08640
Entry
LRK53_08640       CDS       T08065                                 
Name
(GenBank) HsdR family type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
rth  Rhodanobacter thiooxydans
Brite
KEGG Orthology (KO) [BR:rth00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:rth02048]
    LRK53_08640
Enzymes [BR:rth01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     LRK53_08640
Prokaryotic defense system [BR:rth02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   LRK53_08640
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N ResIII T1R_D3-like DEAD T1RH-like_C YdiH SNF2-rel_dom Acyl_transf_1
Other DBs
NCBI-ProteinID: UJJ56421
LinkDB
Position
complement(1938718..1941714)
AA seq 998 aa
MKKKPEPFKATKLAVEATTVQFPLVDHAAAAGWARVNEADALRKRRGEGGLFFYDELEAA
LLRLNPGVVTPADVPGIVQRLESLPNTIVGNREVLDWLRGKKTIYVDSEKRQRNVRLVDY
DNATGSNIFQVTWEWAYRNGTRKGNRADVVFVINGMPVAIVENKNPKSKDAMSKALVQLR
RYELETPEMLTSPQVFNITHLIEYFYGVTWNTQRKFVFNWKEEQPMGRMPKCRGRMDAQE
RPGNYEDRVKHFFEHARFLRMLRDWILFFEQDDELRKTILRQHQTRAAIKVAERCADPAK
RSGLVWHTQGSGKTFTMVTAARLMLENPQRFAGATVLLVVDRNELEGQLSGWVDALLGDL
QGSGIAVELATSKKRLKSLLKQEFSGLIVTMIHKFDKLDANLSTRSNVYVLIDEAHRSTG
GDLGNYLMGALPHATLIGFTGTPVDKTAYGKGTFKTFGREDTSGYLDKYSIAESVADGTT
VRLRHTLAPARVLLPVEKLEQEFYALAESEGISDINDLNRILDRAVNLRAFLKSDQRVDE
VARFVAQHFRENVEPLGYKAFLVGVDREACALYKQALDKYLPADYSVPVYTSSAADAIDY
PLVASHQIDAACEKRVRKLFRKPGQQPKILIVTDKLLTGYDAPILYAMYLDKPMRDHVLL
QAISRVNRPYEDAEGRQKPGGLIVDFIGMLRDLNKALAFDSQDVSGVIEDLDLLLAEFRR
LLAEAKAHYLAPLDGGKDKQLETMLYDVFLAPEARQEFIDSYRQIESLYEILSPSPELRE
HVEDFRQLADLYLMMRNAYSSPSRFYEDVAHKTEQMVREMASSYAPVATGKTVEFDLKTL
QALRSEGDDNATVINLVRAIETEAEEQTEQQPVLVDIAQRATAILDALEQRTIHTQQAIE
QLSQLVGEREQADVEREKLGLDPSTFAIYWYLHGDGIKDALPVAHEIMAAAGKYPNHREN
DDERRQLKSEIYRSLVTRGVDGAQMVRLGEAVLRILRD
NT seq 2997 nt   +upstreamnt  +downstreamnt
atgaagaagaaaccagagcccttcaaagcgaccaaactggcggtcgaagccaccaccgta
cagttcccgctggtcgaccacgctgccgcggccggctgggcgcgcgtgaacgaggcggat
gccctgcgcaagcgtcgcggcgaaggcggcctgttcttctacgacgagctggaagcggcg
ctgctgcgcctgaatcccggcgtggtgacgccggccgacgtgcccggcatcgtgcagcgg
ctggaaagcctgcccaacaccatcgtcggcaatcgcgaagtgctggactggctgcgcggc
aagaagacgatttacgtggacagcgaaaagcgccagcgcaatgtgcggttggtcgattac
gacaacgcgaccggcagcaacatcttccaggtcacctgggaatgggcgtaccgcaacggc
acgcgcaagggcaatcgcgccgacgtggtgttcgtgatcaacggcatgccagtggcgatc
gtcgagaacaagaatcccaaatcgaaggacgcgatgagcaaggcactggtgcagttgcgc
cgctacgagctggaaacgccggaaatgctcacgtcgccgcaggtgttcaacatcacccac
ctgatcgaatatttctacggcgtcacctggaatacccagcgcaagttcgtcttcaactgg
aaggaagagcaaccgatgggcaggatgcccaagtgccgcgggcgcatggatgcgcaggag
cggccgggcaactacgaagaccgggtcaagcatttcttcgaacacgcccgcttcctgcgc
atgctgcgcgactggattctgtttttcgagcaggacgacgagctgcgcaagaccatcctg
cgccagcaccagacccgcgcggcgatcaaggtggccgagcgctgcgccgacccggccaag
cgcagcggcctggtgtggcacacgcaaggctcgggcaagaccttcaccatggtgaccgct
gcgcggctgatgctggaaaacccgcagcggttcgccggcgccaccgtgctgctggtggtg
gatcgcaacgagctggaaggccagttgtccggctgggtggatgccctgctcggcgacctg
cagggcagcggcattgcggtggagctggccaccagcaagaaacggctgaagtcgctgctg
aagcaggagttcagcggcctgatcgtcaccatgatccacaagttcgacaagctggacgcc
aacttgtccacgcgcagcaacgtgtacgtgctgatcgacgaggcgcatcgctccaccggc
ggcgacctgggcaattacctgatgggcgccctgccccacgccaccctgatcggctttacc
ggcacgccggtggacaagaccgcctacggcaagggcacgttcaagacctttggccgcgag
gacacgtcgggctacctggacaagtattcgattgccgagtccgtggccgacggcaccacg
gtgcgcctgcgccacacgctggcgccggcgagggtgctgctgccggtggagaagctggag
caggagttctatgcgctggccgagagcgagggcatcagcgacatcaacgacctgaaccgg
attctcgatcgggcggtgaacctgcgtgccttcctcaagtccgaccagcgcgtggacgag
gtggcgcgcttcgtggctcagcacttccgcgagaacgtcgaaccactgggttacaaggcg
ttcctggtgggcgtggatcgtgaagcgtgcgcgctgtacaagcaagcgctggacaagtac
ctgccagccgactactcggtgccggtgtacacgtcgagcgccgccgacgcgatcgactac
ccgctggtggccagccaccagatcgatgcggcctgcgagaaacgcgtgcgcaagctgttc
cgcaagccgggacagcaaccgaagatcctgatcgtcaccgacaagctgctgaccggttac
gacgcgccgatcctgtatgcgatgtacctggacaagccgatgcgcgaccacgtactgctg
caggccatctcgcgcgtcaatcgcccctacgaagatgcggaaggacggcagaagcccgga
gggctgatcgtcgacttcattggcatgctgcgcgatctgaacaaggcgctggcgttcgat
tcgcaggatgtctccggcgtgatcgaggatctggacctgttgctggcggagttccgtcgg
ctgctggcggaagcgaaggcgcactacctggcacccctggatggcggcaaggacaagcag
ctcgaaacgatgctttacgacgtattcctcgcaccggaggcacgccaggaattcatcgac
agctatcggcagatcgaaagcctgtacgaaatcctctcgccctcgccggagttgcgcgaa
cacgtcgaggacttccgccaactggccgacctgtacctgatgatgcgcaacgcctacagc
agcccgagccgcttctacgaagacgttgcgcacaagaccgagcagatggtgcgcgagatg
gccagcagctacgcaccggtggccaccggcaaaaccgtcgaattcgacctcaagaccctg
caggccctgcgctcggagggcgacgacaacgccaccgtgatcaacctggtgcgagccatc
gaaaccgaggccgaggaacagacggagcagcaacccgtgctggtcgacattgcccagcgc
gctaccgccatcctcgatgcgctggagcagcgcacgatacacacgcagcaggccatcgag
cagctttcgcaactggtcggcgaacgtgagcaggctgacgtggaacgggagaaactggga
ctggatccatccacgttcgccatttactggtacctgcacggcgatggcatcaaggacgcg
ctgcccgtggcgcacgagatcatggcggcggccggcaaataccccaaccaccgcgagaac
gacgacgagcgacgccagctcaagtccgagatttaccgcagcctggtgacccgcggcgtc
gatggcgcgcaaatggtgcgcctcggcgaggccgtgctgcgcatactgcgtgactga

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