Rhodanobacter thiooxydans: LRK53_10195
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Entry
LRK53_10195 CDS
T08065
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRK53_10195 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rth03019
]
LRK53_10195 (pnp)
03016 Transfer RNA biogenesis [BR:
rth03016
]
LRK53_10195 (pnp)
Enzymes [BR:
rth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LRK53_10195 (pnp)
Messenger RNA biogenesis [BR:
rth03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LRK53_10195 (pnp)
Transfer RNA biogenesis [BR:
rth03016
]
Prokaryotic type
tRNA degradation factors
LRK53_10195 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
OB_PDCD11
S1_TP0910
OB_RRP5_4th
DUF1367
KH_2
Motif
Other DBs
NCBI-ProteinID:
UJJ53369
LinkDB
All DBs
Position
complement(2277733..2279844)
Genome browser
AA seq
703 aa
AA seq
DB search
MKKTLKALAFGKHELIIETGAVARQASAAVTVRLDDTVVLVTAVADKRLSPGRDFFPLTV
NYQEKFYAAGRIPGGFFKREGRLTEKETLVSRLIDRPIRPLFPKEFLHEVQVVATVMSLN
PEVDSDIPALIGASAALALSGVPFAGPIGAARVGYCGGEFVLNPTQTELRTSELDLVVAG
TSKAVLMVESEASLLSEGIMLSAVMFGHRAMQPVIAAIRELVAEAGVTPWSWTVPARNEA
LTDRVRSLVGLSLVEAYAIADKGERQAAVRAARDAMLEVIDQERESHGWTSQQAIAAFED
LEHHTVRQLVLESRKRIDGRRLDEVRPIHIDVHNLPRPHGSAMFTRGETQAIVTATLGTG
RDAQLIDAAEGESKELFMLHYNFPPYCVGEAGFMGGPKRREIGHGRLAKRGLKAVLPSFD
DFPYVLRVVSEITESNGSSSMASVCGGSLALMDAGVPLKAPVAGIAMGLVKEGFRHAVLT
DILGDEDHLGDMDFKVAGTRGGVSALQMDIKIDGITEEIMREALAQARQGRLHILDEMDK
ALDRPRVELSEYAPRLVTFRISPDKIRDVIGKGGVTIRSITEETGVTLDIRDDGTVVIAS
RDAAATARARARVEQITTDVEPGSVYEGRVAKIMDFGAFVTILPGKDGLVHISQIAEDRV
ECVADHLSEGDLVRVKVLEVDRQGRIRLSMKALAEPATVPDVA
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacactcaaggccttggcgttcggcaagcacgaactcatcatcgagactggg
gcggtcgcccgtcaggcatcggctgccgttaccgtacggctggacgatacggtggtgctc
gtcacggcagtggccgacaagcgcctgtcacccgggcgggactttttcccgctcaccgtc
aactatcaggaaaagttttacgcggcaggacgcatccccggcggatttttcaaacgcgag
ggtcgcctgaccgagaaggaaaccctggtgtcgcgcctcattgatcgcccgattcgaccg
ctgttcccaaaggaattcctgcacgaggtgcaggtggtcgccaccgtgatgtcgctgaac
ccggaggtggactcggatatcccggccctaatcggtgcttcggcagcgctggccctctcc
ggcgtgccgttcgccggaccgatcggcgcggcacgcgtgggctattgcggcggcgagttt
gtgctcaatcctactcaaaccgagctgcggacatccgaactggatctcgtcgtggctggg
acatccaaggcggtcttgatggtcgagtcggaagccagtctgctttccgagggcatcatg
ctcagcgcggtgatgttcggtcatcgtgccatgcagccggtgatcgccgccatccgcgaa
ctggtcgcagaggctggcgtcacgccatggtcgtggacggtgcctgcgcgtaatgaagca
ttgaccgatcgtgtccgcagtctggtgggactcagtctcgtggaagcctacgccatcgcc
gacaagggcgaacgccaggcggctgttcgcgcggcccgtgacgcgatgctggaggtgatc
gatcaggagagggagtcccatggctggaccagccagcaggccatcgcggcattcgaggac
ctcgaacatcacaccgtgcggcagctcgtgctggaatcgcgcaagcgcatcgacggccgg
cgcctggacgaggtgcgacctatccacatcgacgtacacaatttgccgcgaccccacggt
tcggccatgtttacccggggtgagacgcaggccatcgtgacggccacgctgggcaccggg
cgcgacgcacagctcatcgatgcggccgagggcgaatcgaaagaactgttcatgctgcac
tacaactttcccccgtactgcgtcggcgaggccggattcatgggcggccccaagcgccgg
gagatcggccacggccggcttgccaagcgcggcctcaaggcggtgttgccgtccttcgat
gattttccgtatgtgctgcgcgtggtgtcggaaatcaccgagtccaacgggtcgagttcg
atggcgtcggtgtgcggtggatcgctggcactgatggatgccggcgtgccattgaaagcg
ccggtcgccggcatcgccatgggtttggtcaaagagggtttccggcacgcggtgctgacc
gacatcctgggcgatgaagatcatctgggtgacatggacttcaaggtcgccggcacccgc
ggcggcgtgtccgcgttgcagatggatatcaagatcgacggcatcaccgaggagatcatg
cgtgaagcgctggcccaggcgcgccagggacggctgcatatcctcgatgaaatggacaag
gccctcgatcggccacgcgttgagctgagcgagtacgcgccgcggctggtgaccttccgc
atctcgcccgacaagattcgtgacgtgatcggcaagggcggtgtcacgattcgctcgatc
accgaggagaccggcgtcaccctggacatccgcgacgatggcactgtggtgatcgcgtcg
cgcgacgcggcggccactgccagggcacgggcgcgggtggaacagatcaccaccgacgtc
gagccgggcagcgtctacgaaggccgggtcgccaagatcatggatttcggcgccttcgtc
accatccttcccggcaaggatggcctggtgcacatctcgcagatcgccgaagaccgtgtc
gagtgtgtggccgatcatctcagcgagggcgaccttgtgcgggtcaaggtgctggaagtc
gatcgccaggggcgcatacggttgtcgatgaaggcgcttgccgaaccggcgacggttccg
gatgttgcctga
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